PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c1lvaA_

Fold library id	PDB Header	Molecule	Title
c1lvaA_	PDB header: translation	Chain: A: PDB Molecule: selenocysteine-specific elongation factor;	PDBTitle: crystal structure of a c-terminal fragment of moorella2 thermoacetica elongation factor selb

Links to external resources
Added to library: Wed Jan 9 19:10:44 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G S P E K I L A Q I I Q E H R E G L D W Q E A A T R A S L S L E E T R K L L Q S X A A A G Q V T L L R V E N D L Y A I S T E R Y Q A W W Q A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T
T
T T S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V T R A L E E F H S R Y P L R P G L A R E E L R S R Y F S R L P A R V Y Q A L L E E W S R E G R L Q L A A N T V A L A G F T P S F S E T Q K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
T T S
T T S T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K L L K D L E D K Y R V S R W Q P P S F K E V A G S F N L D P S E L E E L L H Y L V R E G V L V K I N D E F Y W H R Q A L G E A R E V I K N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
B T T
T T S S S S S B

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . .

Sequence L A S T G P F G L A E A R D A L G S S R K Y V L P L L E Y L D Q V K F T R R V G D K R V V V G N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
B
T
T T S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	S	P	E	K	I	L	A	Q	I	I	Q	E	H	R	E	G	L	D	W	Q	E	A	A	T	R	A	S	L	S	L	E	E	T	R	K	L	L	Q	S	X	A	A	A	G	Q	V	T	L	L	R	V	E	N	D	L	Y	A	I	S	T	E	R	Y	Q	A	W	W	Q	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T		T	T												T																T	T	S							T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	T	R	A	L	E	E	F	H	S	R	Y	P	L	R	P	G	L	A	R	E	E	L	R	S	R	Y	F	S	R	L	P	A	R	V	Y	Q	A	L	L	E	E	W	S	R	E	G	R	L	Q	L	A	A	N	T	V	A	L	A	G	F	T	P	S	F	S	E	T	Q	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	S	S													T	T	S															T	T	S					T	T					T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	L	L	K	D	L	E	D	K	Y	R	V	S	R	W	Q	P	P	S	F	K	E	V	A	G	S	F	N	L	D	P	S	E	L	E	E	L	L	H	Y	L	V	R	E	G	V	L	V	K	I	N	D	E	F	Y	W	H	R	Q	A	L	G	E	A	R	E	V	I	K	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T	S			B								T	T																T	T	S				S	S	S	S	B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Sequence	L	A	S	T	G	P	F	G	L	A	E	A	R	D	A	L	G	S	S	R	K	Y	V	L	P	L	L	E	Y	L	D	Q	V	K	F	T	R	R	V	G	D	K	R	V	V	V	G	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S		B										T																T	T	S					T	T