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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1l9uD_

Fold library idPDB HeaderMoleculeTitle
c1l9uD_PDB header: transcriptionChain: D: PDB Molecule: rna polymerase, beta-prime subunit;PDBTitle: thermus aquaticus rna polymerase holoenzyme at 4 a2 resolution


Added to library: Thu Jan 10 06:04:51 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQRFEGKV
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Known secondary structure (DSSP)



SB





GGG
S


S



S
TTT
S

SSSS

SS
SS



SGGG

SSS



SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence CERCGVEVTRSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFNKYIVLDPKGAVL
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Known secondary structure (DSSP)

SSTTTSSSGGG









SS


S


SSS
SSSTTTT

SSTSSS





S

TTT

 .........150.........160.........170.........180.........190.........200.........210
Sequence DGVPVEKRQLLTDEEDARMGAEAIQELLKELDLEKLERELLEEMKHPSRARRAKARKRLEVVRAFLDSGN
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Known secondary structure (DSSP)
SSS

TTTTTTTSS



SGGGTTTSSSTTTTTTTTTS

SSSSSSSTTTTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence RPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEA
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Known secondary structure (DSSP)
S
TT
S





TT




B
STT

B


SSTTTTT


TTTTTTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence VDAVIDNGRRGSPVTNPGSERPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKR
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Known secondary structure (DSSP) TSTTS


SS


SSSS






SSSSSTTSSSSSSTTTTT



SS
B



B


SSTTT

B

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence MALELFKPFLLKKMEEKAFAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQ
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Known secondary structure (DSSP) TTTTTSSSTT
SSGGGS
S
TT

TTGGGSSSS




B
SS

SGGG




 .........430.........440.........450.........460.........470.........480.........490
Sequence PVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIIL
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Known secondary structure (DSSP)



SSSS
B

S



SS


BB




SBTTBSSS
TTSS

SS

SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence GLYYITQVRKEKKGAGMAFATPEEALAAYERGEVALNAPIVVAGRETSVGRLKFVFANPDEALLAVAHGL
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Known secondary structure (DSSP) TT
S










SSSTTTTSS

SS


SSS

S

S


SSS


TTTSSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence LDLQDVVTVRYLGRRLETSPGRILFARIVGEAVGDEKVAQELIQMDVPQEKNSLKDLVYQAFLRLGMEKT
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Known secondary structure (DSSP) S
SSS


SSS


STTS

SS


SSTTTSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence ARLLDALKYYGFTLSTTSGITIGIDDAVIPEEKQRYLEEADRKLRQIEQAYEMGFLTDRERYDQVIQLWT
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Known secondary structure (DSSP) TTSSS




TTTS


SSTTTSSSS
TTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence ETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGMRGLMQKPSGETFEVPVRSSFREGLTV
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Known secondary structure (DSSP) TTTTTTSSSSS
TTSSSSSSSS

SS




TTT
SS




SSS


S
 .........780.........790.........800.........810.........820.........830.........840
Sequence LEYFISSHGARKGGADTALRTADSGYLTRKLVDVAHEIVVREADCGTTNYISVPLFQMDEVTRTLRLRKR
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Known secondary structure (DSSP) TTTTT
S




B









TTSSS

S
 .........850.........860.........870.........880.........890.........900.........910
Sequence SDIESGLYGRVLAREVEALGRRLEEGRYLSLEDVHFLIKAAEAGEVREVPVRSPLTCQTRYGVCQKCYGY
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Known secondary structure (DSSP) TTTSS



S
B

TT

B
SS



TTSTGGGSS
S


TTS
S
TT


BSSS
S
 .........920.........930.........940.........950.........960.........970.........980
Sequence DLSMARPVSIGEAVGVVAAESIGEPGTQLTMRTPRVIELFEARRPKAKAVISEIDGVVRIEEGEDRLSVF
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Known secondary structure (DSSP)
SSSSSS

TT

TT
S
TTSS
SSS

TT



TT




SS
S

B



SS



B
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence VESEGFSKEYKLPKDARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVDEIQKVYRAQGVKL
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Known secondary structure (DSSP)


SS







SS




SS

SSS

SS
SSS
S
SS
TTT


 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence HDKHIEIVVRQMLKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAVPVAWKPLLMGVTKSALSTKSWLS
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Known secondary structure (DSSP)
SSTTS
B
S
SSS

TT


BTTSTTT







TTTTTSS
S
TTT
 .........1130.........1140.........1150.........1160.........1170.........1180...
Sequence AASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQRTLKAIEEAR
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Known secondary structure (DSSP) TTSSS
TSS


B
S

TT


SSTTSSTT







S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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