PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c1l6zA_

Fold library id	PDB Header	Molecule	Title
c1l6zA_	PDB header: cell adhesion	Chain: A: PDB Molecule: biliary glycoprotein c;	PDBTitle: crystal structure of murine ceacam1a[1,4]: a coronavirus2 receptor and cell adhesion molecule in the cea family

Links to external resources
Added to library: Tue Mar 16 12:26:12 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E V T I E A V P P Q V A E D N N V L L L V H N L P L A L G A F A W Y K G N T T A I D K E I A R F V P N S N M N F T G Q A Y S G R E I I Y S N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T
S
T T
S S S
S G G G
S T T
S S
S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G S L L F Q M I T M K D M G V Y T L D M T D E N Y R R T Q A T V R F H V H Q P V T Q P F L Q V T N T T V K E L D S V T L T C L S N D I G A N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
G G G
T T
S
S
T T S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . .

Sequence I Q W L F N S Q S L Q L T E R M T L S Q N N S I L R I D P I K R E D A G E Y Q C E I S N P V S V R R S N S I K L D I I F D P S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T T T T
S
G G G
S S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	V	T	I	E	A	V	P	P	Q	V	A	E	D	N	N	V	L	L	L	V	H	N	L	P	L	A	L	G	A	F	A	W	Y	K	G	N	T	T	A	I	D	K	E	I	A	R	F	V	P	N	S	N	M	N	F	T	G	Q	A	Y	S	G	R	E	I	I	Y	S	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S	S			T	T									S			T	T		S							S	S			S	G	G	G							S	T	T							S	S			S	S					T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	S	L	L	F	Q	M	I	T	M	K	D	M	G	V	Y	T	L	D	M	T	D	E	N	Y	R	R	T	Q	A	T	V	R	F	H	V	H	Q	P	V	T	Q	P	F	L	Q	V	T	N	T	T	V	K	E	L	D	S	V	T	L	T	C	L	S	N	D	I	G	A	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S						S			G	G	G											T	T																								S		S				T	T	S											S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Sequence	I	Q	W	L	F	N	S	Q	S	L	Q	L	T	E	R	M	T	L	S	Q	N	N	S	I	L	R	I	D	P	I	K	R	E	D	A	G	E	Y	Q	C	E	I	S	N	P	V	S	V	R	R	S	N	S	I	K	L	D	I	I	F	D	P	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T							T	T					T	T	T	T						S			G	G	G										S	S	S															S