PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1kijB_

Fold library id	PDB Header	Molecule	Title
c1kijB_	PDB header: isomerase	Chain: B: PDB Molecule: dna gyrase subunit b;	PDBTitle: crystal structure of the 43k atpase domain of thermus2 thermophilus gyrase b in complex with novobiocin

Links to external resources
Added to library: Tue Mar 16 13:55:37 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A I R V L K G L E G V R H R P A M Y I G G T G V E G Y H H L F K E I L D N A V D E A L A G Y A T E I L V R L N E D G S L T V E D N G R G I P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T S
S S T T S
T T S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V D L M P E E G K P A V E V I Y N T L H S G G K F E Q G A Y K V S G G L H G V G A S V V N A L S E W T V V E V F R E G K H H R I A F S R G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T T S S
S G G G S S S
S
S S T T S T T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V T E P L R V V G E A P R G K T G T R V T F K P D P E I F G N L R F D P S K I R A R L R E V A Y L V A G L K L V F Q D R Q H G K E E V F L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
T T T
T T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence K G G V A S F A K A L A E G E D L L Y E K P F L I R G T H G E V E V E V G F L H T Q G Y N A E I L T Y A N M I P T R D G G T H L T A F K S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T S
B S S S S
T T B S S S
T T
T T
B

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence Y S R A L N Q Y A K K A G L N K E K G P Q P T G D D L L E G L Y A V V S V K L P N P Q F E G Q T K G K L L N P E A G T A V G Q V V Y E R L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S T T
S S T T
S S
B S S S S
S S B

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . .

Sequence E I L E E N P R I A K A V Y E K A L R A A Q A R E A A R K A R E L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	I	R	V	L	K	G	L	E	G	V	R	H	R	P	A	M	Y	I	G	G	T	G	V	E	G	Y	H	H	L	F	K	E	I	L	D	N	A	V	D	E	A	L	A	G	Y	A	T	E	I	L	V	R	L	N	E	D	G	S	L	T	V	E	D	N	G	R	G	I	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T							T					S		S	S																					T	T	S										T	T	S							S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	D	L	M	P	E	E	G	K	P	A	V	E	V	I	Y	N	T	L	H	S	G	G	K	F	E	Q	G	A	Y	K	V	S	G	G	L	H	G	V	G	A	S	V	V	N	A	L	S	E	W	T	V	V	E	V	F	R	E	G	K	H	H	R	I	A	F	S	R	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S			T	T	T	T										S	S				S	G	G	G	S	S	S					S		S	S	T	T	S							T											T	T									T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	T	E	P	L	R	V	V	G	E	A	P	R	G	K	T	G	T	R	V	T	F	K	P	D	P	E	I	F	G	N	L	R	F	D	P	S	K	I	R	A	R	L	R	E	V	A	Y	L	V	A	G	L	K	L	V	F	Q	D	R	Q	H	G	K	E	E	V	F	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S	S																T	T																			T	T	T								T	T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	K	G	G	V	A	S	F	A	K	A	L	A	E	G	E	D	L	L	Y	E	K	P	F	L	I	R	G	T	H	G	E	V	E	V	E	V	G	F	L	H	T	Q	G	Y	N	A	E	I	L	T	Y	A	N	M	I	P	T	R	D	G	G	T	H	L	T	A	F	K	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T										T	T	T	S		B	S	S	S	S									T	T										B	S	S	S									T	T				T	T		B
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	Y	S	R	A	L	N	Q	Y	A	K	K	A	G	L	N	K	E	K	G	P	Q	P	T	G	D	D	L	L	E	G	L	Y	A	V	V	S	V	K	L	P	N	P	Q	F	E	G	Q	T	K	G	K	L	L	N	P	E	A	G	T	A	V	G	Q	V	V	Y	E	R	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T			S	T	T					S	S					T	T										S	S			B	S	S	S	S		S	S	B
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Sequence	E	I	L	E	E	N	P	R	I	A	K	A	V	Y	E	K	A	L	R	A	A	Q	A	R	E	A	A	R	K	A	R	E	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																T	T