PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1jssB_

Fold library id	PDB Header	Molecule	Title
c1jssB_	PDB header: lipid binding protein	Chain: B: PDB Molecule: cholesterol-regulated start protein 4;	PDBTitle: crystal structure of the mus musculus cholesterol-regulated2 start protein 4 (stard4).

Links to external resources
Added to library: Tue Mar 16 12:01:40 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A S I S T K L Q N T L I Q Y H S I E E D E W R V A K K A K D V T V W R K P S E E F N G Y L Y K A Q G V M D D V V N N V I D H I R P G P W R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S
T T S
T T
S S S S S S S
S S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D W D R L M T S L D V L E H F E E N C C V M R Y T T A G Q L L N I I S P R E F V D F S Y T V G Y E E G L L S C G V S V E W S E T R P E F V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
S T T S S
T T
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . .

Sequence G Y N H P C G W F C V P L K D S P S Q S L L T G Y I Q T D L R G M I P Q S A V D T A M A S T L A N F Y S D L R K G L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S S
S S
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	S	I	S	T	K	L	Q	N	T	L	I	Q	Y	H	S	I	E	E	D	E	W	R	V	A	K	K	A	K	D	V	T	V	W	R	K	P	S	E	E	F	N	G	Y	L	Y	K	A	Q	G	V	M	D	D	V	V	N	N	V	I	D	H	I	R	P	G	P	W	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T													T	T	S		T	T	S								T	T									S	S	S	S	S										S	S										S	S	S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	W	D	R	L	M	T	S	L	D	V	L	E	H	F	E	E	N	C	C	V	M	R	Y	T	T	A	G	Q	L	L	N	I	I	S	P	R	E	F	V	D	F	S	Y	T	V	G	Y	E	E	G	L	L	S	C	G	V	S	V	E	W	S	E	T	R	P	E	F	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S												T	T												S	T	T	S	S															T	T																T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Sequence	G	Y	N	H	P	C	G	W	F	C	V	P	L	K	D	S	P	S	Q	S	L	L	T	G	Y	I	Q	T	D	L	R	G	M	I	P	Q	S	A	V	D	T	A	M	A	S	T	L	A	N	F	Y	S	D	L	R	K	G	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S									T	T		S	S														S	S																									T