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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c1jeyB_

Fold library idPDB HeaderMoleculeTitle
c1jeyB_PDB header: dna binding protein/dnaChain: B: PDB Molecule: ku80;PDBTitle: crystal structure of the ku heterodimer bound to dna


Added to library: Tue Mar 16 12:15:00 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NKAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQ
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Known secondary structure (DSSP)



GGGG

BTTB

TT


S
SS
BSTT
TTT
ST
 .........80.........90.........100.........110.........120.........130.........140
Sequence NITVHRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKS
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Known secondary structure (DSSP) T


TT



SS


SSSS

S



S



T
 .........150.........160.........170.........180.........190.........200.........210
Sequence QLDIIIHSLKKCDISLQFFLPFSLGGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIY
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Known secondary structure (DSSP) TTTSS






TT
SS



TTTS

GGGGGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence SFSESLRKLCVFKKIERHSIHWPCRLTIGSNLSIRIAAYKSILQERVKKTWTVVDAKTLKKEDIQKETVY
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Known secondary structure (DSSP) TTSSTTTGGG





TTT












TTT

STT





 .........290.........300.........310.........320.........330.........340.........350
Sequence CLNDDDETEVLKEDIIQGFRYGSDIVPFSKVDEEQMKYKSEGKCFSVLGFCKSSQVQRRFFMGNQVLKVF
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Known secondary structure (DSSP)
SSSS


GGG


TT

S




SGGGS
GGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence AARDDEAAAVALSSLIHALDDLDMVAIVRYAYDKRANPQVGVAFPHIKHNYECLVYVQLPFMEDLRQYMF
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Known secondary structure (DSSP)
TT
TTSSSSS


SS



GGG





 .........430.........440.........450.........460.........470.........480.........490
Sequence SSLKNSKKYAPTEAQLNAVDALIDSMSLAKKDEKTDTLEDLFPTTKIPNPRFQRLFQCLLHRALHPREPL
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Known secondary structure (DSSP)

STT
SSS


T



TTSS

S

GGGS


TTS

 .........500.........510.........520.........530
Sequence PPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLIEAKKK
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Known secondary structure (DSSP)



S

S








Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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