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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1izlB_

Fold library idPDB HeaderMoleculeTitle
c1izlB_PDB header: photosynthesisChain: B: PDB Molecule: photosystem ii: subunit psbb;PDBTitle: crystal structure of photosystem ii


Added to library: Thu Jan 10 12:49:40 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MGLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLG
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Known secondary structure (DSSP)


SSSSS



SS
TTTTTTTTTTTTSSSSSS

SS
SSS




TTTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence VTGSWSGTGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLA
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Known secondary structure (DSSP)
S
SS



SS

SSSSTTTTTTTS


SS
S
SSS

S



GGGG
 .........150.........160.........170.........180.........190.........200.........210
Sequence GLLCFGFGAFHLTGLFGPGMWVSDPQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQ
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Known secondary structure (DSSP) GGGGTT

S
SS
SS
SSS



S

S
TTTTS


SSS



TTTTSTTTSS




 .........220.........230.........240.........250.........260.........270.........280
Sequence RLYKALRMGNIETVLSSSIAAVFFAAFVVAGTMWYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP)

SS

SSS
STTTTTTTTS



TTGGG






S



SSS







SSS

 .........290.........300.........310.........320.........330.........340.........350
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP)

SSS

SS

SS

SSSS



-----------------------------------------------
 .........360.........370.........380.........390.........400.........410.........420
Sequence XGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGA
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Known secondary structure (DSSP) -

SSS






-
SS





SSSS






SSSSS
 .......
Sequence RTLFRDV
Predicted secondary structure

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Known secondary structure (DSSP) TTS




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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