PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1if0A_

Fold library id	PDB Header	Molecule	Title
c1if0A_	PDB header: virus	Chain: A: PDB Molecule: protein (major capsid protein gp5);	PDBTitle: pseudo-atomic model of bacteriophage hk97 procapsid2 (prohead ii)

Links to external resources
Added to library: Tue Mar 16 13:44:47 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G L R R L T I R D L L A Q G R T S S N A L E Y V R E E V F T N N A D V V A E K A L K P E S D I T F S K Q T A N V K T I A H W V Q A S R Q V M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D D A P M L Q S Y I N N R L M Y G L A L K E E G Q L L N G D G T G D N L E G L N K V A T A Y D T S L N A T G D T R A D I I A H A I Y Q V T E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S S S
S T T S
T T T T
B
T T S
T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S E F S A S G I V L N P R D W H N I A L L K D N E G R Y I F G G P Q A F T S N I M W G L P V V P T K A Q A A G T F T V G G F D M A S Q V W D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S
T T T
B T T B
S S
T T
S
S T T S
T T S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . .

Sequence R M D A T V E V S R E D R D N F V K N M L T I L C E E R L A L A H Y R P T A I I K G T F S S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S T
G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	L	R	R	L	T	I	R	D	L	L	A	Q	G	R	T	S	S	N	A	L	E	Y	V	R	E	E	V	F	T	N	N	A	D	V	V	A	E	K	A	L	K	P	E	S	D	I	T	F	S	K	Q	T	A	N	V	K	T	I	A	H	W	V	Q	A	S	R	Q	V	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S						S	S	S																			T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	D	A	P	M	L	Q	S	Y	I	N	N	R	L	M	Y	G	L	A	L	K	E	E	G	Q	L	L	N	G	D	G	T	G	D	N	L	E	G	L	N	K	V	A	T	A	Y	D	T	S	L	N	A	T	G	D	T	R	A	D	I	I	A	H	A	I	Y	Q	V	T	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S		S																						S	S				S	T	T	S				T	T	T	T			B			T	T	S			T	T			T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	E	F	S	A	S	G	I	V	L	N	P	R	D	W	H	N	I	A	L	L	K	D	N	E	G	R	Y	I	F	G	G	P	Q	A	F	T	S	N	I	M	W	G	L	P	V	V	P	T	K	A	Q	A	A	G	T	F	T	V	G	G	F	D	M	A	S	Q	V	W	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S	S									T	T							T			B	T	T	B			S	S			T	T					S		S	T	T	S						T	T	S		T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Sequence	R	M	D	A	T	V	E	V	S	R	E	D	R	D	N	F	V	K	N	M	L	T	I	L	C	E	E	R	L	A	L	A	H	Y	R	P	T	A	I	I	K	G	T	F	S	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S		S	S	S					T																	G	G	G