PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c1fzjA_

Fold library id	PDB Header	Molecule	Title
c1fzjA_	PDB header: immune system	Chain: A: PDB Molecule: h-2 class i histocompatibility antigen, k-b	PDBTitle: mhc class i natural mutant h-2kbm1 heavy chain complexed2 with beta-2 microglobulin and vesicular stomatitis virus3 nucleoprotein

Links to external resources
Added to library: Tue Mar 16 13:00:06 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G P H S L R Y F V T A V S R P G L G E P R Y M E V G Y V D D T E F V R F D S D A E N P R Y E P R A R W M E Q E G P E Y W E R E T Q K A K G N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S
T T T T S S S
S G G G G G S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E Q S F R V D L R T L L G Y Y N Q S K G G S H T I Q V I S G C E V G S D G R L L R G Y Q Q Y A Y D G D Y I A L N E D L K T W T A A D M A A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S
T T S
T T S S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I T K H K W E Q A G A A E Y Y R A Y L E G T C V E W L R R Y L K N G N A T L L R T D S P K A H V T H H S R P E D K V T L R C W A L G F Y P A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
B
T T T B S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . .

Sequence D I T L T W Q L N G E E L I Q D M E L V E T R P A G D G T F Q K W A S V V V P L G K E Q Y Y T C H V Y H Q G L P E P L T L R W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
G G G
S S S
T T
G G G
T T
S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	P	H	S	L	R	Y	F	V	T	A	V	S	R	P	G	L	G	E	P	R	Y	M	E	V	G	Y	V	D	D	T	E	F	V	R	F	D	S	D	A	E	N	P	R	Y	E	P	R	A	R	W	M	E	Q	E	G	P	E	Y	W	E	R	E	T	Q	K	A	K	G	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T	S		S										T	T								T	T	S	S	S							S	G	G	G	G	G	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	Q	S	F	R	V	D	L	R	T	L	L	G	Y	Y	N	Q	S	K	G	G	S	H	T	I	Q	V	I	S	G	C	E	V	G	S	D	G	R	L	L	R	G	Y	Q	Q	Y	A	Y	D	G	D	Y	I	A	L	N	E	D	L	K	T	W	T	A	A	D	M	A	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T			S	S	S														T	T	S																				T	T	S	S					S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	T	K	H	K	W	E	Q	A	G	A	A	E	Y	Y	R	A	Y	L	E	G	T	C	V	E	W	L	R	R	Y	L	K	N	G	N	A	T	L	L	R	T	D	S	P	K	A	H	V	T	H	H	S	R	P	E	D	K	V	T	L	R	C	W	A	L	G	F	Y	P	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T											T													T					T			B												T	T	T												B	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Sequence	D	I	T	L	T	W	Q	L	N	G	E	E	L	I	Q	D	M	E	L	V	E	T	R	P	A	G	D	G	T	F	Q	K	W	A	S	V	V	V	P	L	G	K	E	Q	Y	Y	T	C	H	V	Y	H	Q	G	L	P	E	P	L	T	L	R	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T				G	G	G										S	S	S												T	T		G	G	G								T	T		S	S