PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c1foeA_

Fold library id	PDB Header	Molecule	Title
c1foeA_	PDB header: signaling protein, immune system/signali	Chain: A: PDB Molecule: t-lymphoma invasion and metastasis inducing	PDBTitle: crystal structure of rac1 in complex with the guanine2 nucleotide exchange region of tiam1

Links to external resources
Added to library: Tue Mar 16 12:54:07 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q L S D A D K L R K V I C E L L E T E R T Y V K D L N C L X E R Y L K P L Q K E T F L T Q D E L D V L F G N L T E X V E F Q V E F L K T L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S S S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D G V R L V P D L E K L E K V D Q F K K V L F S L G G S F L Y Y A D R F K L Y S A F C A S H T K V P K V L V K A K T D T A F K A F L D A Q N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
G G G
S G G G G T T G G G G T T T T T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P R Q Q H S S T L E S Y L I K P I Q R V L K Y P L L L R E L F A L T D A E S E E H Y H L D V A I K T X N K V A S H I N E X Q K I H E E F G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G S T T T T T S
T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence V F D Q L I A E Q T G E K K E V A D L S X G D L L L H T S V I W L N P P A S L G K W K K E P E L A A F V F K T A V V L V Y K D G S K Q K K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
S
S S
G G G S S
T T
S S
T T
S
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence L V G S H R L S I Y E E W D P F R F R H X I P T E A L Q V R A L P S A D A E A N A V C E I V H V K S E S E G R P E R V F H L C C S S P E S R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T T
S S
S
S
G G G
T T T T S
B T G G G B
S S

. . . . . . . . . 360 . . . . . . . .

Sequence K D F L K S V H S I L R D K H R R Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	L	S	D	A	D	K	L	R	K	V	I	C	E	L	L	E	T	E	R	T	Y	V	K	D	L	N	C	L	X	E	R	Y	L	K	P	L	Q	K	E	T	F	L	T	Q	D	E	L	D	V	L	F	G	N	L	T	E	X	V	E	F	Q	V	E	F	L	K	T	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																	T						T	S	S	S	S										S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	G	V	R	L	V	P	D	L	E	K	L	E	K	V	D	Q	F	K	K	V	L	F	S	L	G	G	S	F	L	Y	Y	A	D	R	F	K	L	Y	S	A	F	C	A	S	H	T	K	V	P	K	V	L	V	K	A	K	T	D	T	A	F	K	A	F	L	D	A	Q	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	S	S		G	G	G			S	G	G	G	G															T	T	G	G	G	G								T	T	T						T	T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	R	Q	Q	H	S	S	T	L	E	S	Y	L	I	K	P	I	Q	R	V	L	K	Y	P	L	L	L	R	E	L	F	A	L	T	D	A	E	S	E	E	H	Y	H	L	D	V	A	I	K	T	X	N	K	V	A	S	H	I	N	E	X	Q	K	I	H	E	E	F	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T			G	G	G	S					T	T							T	T											T	S		T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	V	F	D	Q	L	I	A	E	Q	T	G	E	K	K	E	V	A	D	L	S	X	G	D	L	L	L	H	T	S	V	I	W	L	N	P	P	A	S	L	G	K	W	K	K	E	P	E	L	A	A	F	V	F	K	T	A	V	V	L	V	Y	K	D	G	S	K	Q	K	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T		S	S		S		S	S					G	G	G										S	S							T	T		S	S									T	T												S			S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	L	V	G	S	H	R	L	S	I	Y	E	E	W	D	P	F	R	F	R	H	X	I	P	T	E	A	L	Q	V	R	A	L	P	S	A	D	A	E	A	N	A	V	C	E	I	V	H	V	K	S	E	S	E	G	R	P	E	R	V	F	H	L	C	C	S	S	P	E	S	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S				T	T	T	T		S	S		S		S									G	G	G									T	T	T	T	S											B	T	G	G	G	B										S	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Sequence	K	D	F	L	K	S	V	H	S	I	L	R	D	K	H	R	R	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)