PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c1fo1A_

Fold library id	PDB Header	Molecule	Title
c1fo1A_	PDB header: rna binding protein	Chain: A: PDB Molecule: nuclear rna export factor 1;	PDBTitle: crystal structure of the rna-binding domain of the mrna2 export factor tap

Links to external resources
Added to library: Wed Jan 9 19:29:25 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T I P Y G R K Y D K A W L L S M I Q S K C F T P I E F H Y E N T R A A L K A V N Y K I L D R E N R R I S I I I E L K P E Q V E Q L K L I M S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S
S S
B T T B
G G G T T T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K R Y D G S Q Q V L D L K G L R S D P D L V A Q N I D V V L N R R S C M A A T L R I I E E N I P E L L S L N L S N N R L Y R L D D M S S I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T
T T G G G
T T
T T S
T T
S S
G G G G T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q K A P N L K I L N L S G N E L K S E R E L D K I K G L K L E E L W L D G N S L C D T F R D Q S T Y I S A I R E R F P K L L R L D G H E L P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
G G G G G G G T T S
S
T T S G G G G G
S S
T T
T T

. . . . .

Sequence P P I A F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	I	P	Y	G	R	K	Y	D	K	A	W	L	L	S	M	I	Q	S	K	C	F	T	P	I	E	F	H	Y	E	N	T	R	A	A	L	K	A	V	N	Y	K	I	L	D	R	E	N	R	R	I	S	I	I	I	E	L	K	P	E	Q	V	E	Q	L	K	L	I	M	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T		T	T	S																	S	S				B	T	T	B				G	G	G	T	T	T				T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	R	Y	D	G	S	Q	Q	V	L	D	L	K	G	L	R	S	D	P	D	L	V	A	Q	N	I	D	V	V	L	N	R	R	S	C	M	A	A	T	L	R	I	I	E	E	N	I	P	E	L	L	S	L	N	L	S	N	N	R	L	Y	R	L	D	D	M	S	S	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T			T	T	T	T					T	T	G	G	G							T	T					T	T	S																T	T								S	S					G	G	G	G	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	K	A	P	N	L	K	I	L	N	L	S	G	N	E	L	K	S	E	R	E	L	D	K	I	K	G	L	K	L	E	E	L	W	L	D	G	N	S	L	C	D	T	F	R	D	Q	S	T	Y	I	S	A	I	R	E	R	F	P	K	L	L	R	L	D	G	H	E	L	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T								S	S					G	G	G	G	G	G	G	T	T	S			S					T	T	S	G	G	G	G	G		S	S													T	T					T	T
	.	.	.	.	.
Sequence	P	P	I	A	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)