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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c1f8vA_

Fold library idPDB HeaderMoleculeTitle
c1f8vA_PDB header: virus/rnaChain: A: PDB Molecule: mature capsid protein beta;PDBTitle: the structure of pariacoto virus reveals a dodecahedral2 cage of duplex rna


Added to library: Tue Mar 16 12:05:34 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NRRNKARKVVSRSTALVPMAPASQRTGPAPRKPRKRNQALVRNPRLTDAGLAFLKCAFAAPDFSVDPGKG
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Known secondary structure (DSSP)

SS

B



SSTTTS




B

SS







TT










TTSSSS




 .........80.........90.........100.........110.........120.........130.........140
Sequence IPDNFHGRTLAIKDCNTTSVVFTPNTDTYIVVAPVPGFAYFRAEVAVGAQPTTFVGVPYPTYATNFGAGS
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Known secondary structure (DSSP)

STT
S
SS


TT
TT




TT

ST
 .........150.........160.........170.........180.........190.........200.........210
Sequence QNGLPAVNNYSKFRYASMACGLYPTSNMMQFSGSVQVWRVDLNLSEAVNPAVTAITPAPGVFANFVDKRI
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Known secondary structure (DSSP) TTTSTTT
S
S
TTT






STT
 .........220.........230.........240.........250.........260.........270.........280
Sequence NGLRGIRPLAPRDNYSGNFIDGAYTFAFDKSTDFEWCDFVRSLEFSESNVLGAATAMKLLAPGGGTDTTL
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Known secondary structure (DSSP) SGGG
SSS

SSGGG


B
SSS


B



BSSSSSTT
TTS

GGGGSS

B
 .........290.........300.........310.........320.........330.........340.........350
Sequence TGLGNVNTLVYKISTPTGAVNTAILRTWNCIELQPYTDSALFQFSGVSPPFDPLALECYHNLKMRFPVAV
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Known secondary structure (DSSP)



SB

TT


TTSTTGGG





TTSS
S
B
 .....
Sequence SSREN
Predicted secondary structure


SS confidence




Known secondary structure (DSSP)
STT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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