Phyre 2 Results for C6Y4D2

Email	l.a.kelley@imperial.ac.uk
Description	C6Y4D2
Date	Sun Jul 8 11:45:10 BST 2012
Unique Job ID	9e0c6e75e86b621f

Summary

Top model

Image coloured by rainbow N → C terminus

Model (left) based on template d1s3aa1

Top template information

Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Mitochondrial ribosomal protein L51/S25/CI-B8 domain

Confidence and coverage

Confidence:

99.3%

Coverage:

61%

83 residues ( 61% of your sequence) have been modelled with 99.3% confidence by the single highest scoring template.

You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.

3D viewing

Interactive 3D view in Jmol

Sequence analysis

Secondary structure and disorder prediction

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence M S S I G G K L Q K S L H K I R A G A L G I P L P K H I Q E V S I Q Y S L D S R L G H M G A K K F V K E C L P S L Y Y N

Secondary structure

SS confidence

Disorder ? ?
? ?
? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence N Y G L K F N V N H R L P N D Q T P T F S I I S N N K V I Y S Y D M R S K Q L E T I S S D I Q K A L K E L H H E S S P E

Secondary structure

SS confidence

Disorder
? ? ? ? ?
? ?
? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 130 . . . . .

Sequence N I K E A H K Q D Y S P P S N

Secondary structure

SS confidence

Disorder ? ? ? ?
? ? ? ? ? ? ? ? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered

Alpha helix

Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank	Aligned region

PDB 1s3a chain A domain 1

Region: 27 - 112
Aligned: 83
Modelled: 86
Confidence: 99.3%
Identity: 14%
Fold: Thioredoxin fold
Superfamily: Thioredoxin-like
Family: Mitochondrial ribosomal protein L51/S25/CI-B8 domain

Phyre2

PDB 2a2p chain A domain 1

Region: 47 - 133
Aligned: 80
Modelled: 87
Confidence: 53.6%
Identity: 19%
Fold: Thioredoxin fold
Superfamily: Thioredoxin-like
Family: Selenoprotein W-related

Phyre2

PDB 2pnw chain A domain 1

Region: 18 - 43
Aligned: 23
Modelled: 26
Confidence: 21.5%
Identity: 30%
Fold: Double psi beta-barrel
Superfamily: Barwin-like endoglucanases
Family: MLTA-like

Phyre2

PDB 3fhk chain F

Region: 77 - 112
Aligned: 36
Modelled: 36
Confidence: 20.6%
Identity: 14%
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:upf0403 protein yphp;
PDBTitle: crystal structure of apc1446, b.subtilis yphp disulfide2 isomerase

Phyre2

PDB 3ks7 chain D

Region: 22 - 50
Aligned: 29
Modelled: 29
Confidence: 19.9%
Identity: 28%
PDB header:hydrolase
Chain: D: PDB Molecule:putative putative pngase f;
PDBTitle: crystal structure of putative peptide:n-glycosidase f (pngase f)2 (yp_210507.1) from bacteroides fragilis nctc 9343 at 2.30 a3 resolution

Phyre2

PDB 2g5d chain A domain 1

Region: 18 - 43
Aligned: 23
Modelled: 26
Confidence: 19.8%
Identity: 22%
Fold: Double psi beta-barrel
Superfamily: Barwin-like endoglucanases
Family: MLTA-like

Phyre2

PDB 2jro chain A

Region: 81 - 118
Aligned: 38
Modelled: 38
Confidence: 19.3%
Identity: 3%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of so0334 from shewanella oneidensis. northeast2 structural genomics target sor75

Phyre2

PDB 3czb chain A

Region: 18 - 43
Aligned: 23
Modelled: 26
Confidence: 16.6%
Identity: 22%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative transglycosylase;
PDBTitle: crystal structure of putative transglycosylase from caulobacter2 crescentus

Phyre2

PDB 2pi8 chain A domain 1

Region: 18 - 43
Aligned: 24
Modelled: 26
Confidence: 15.4%
Identity: 21%
Fold: Double psi beta-barrel
Superfamily: Barwin-like endoglucanases
Family: MLTA-like

Phyre2

PDB 2ae0 chain X domain 1

Region: 18 - 43
Aligned: 24
Modelled: 26
Confidence: 12.6%
Identity: 21%
Fold: Double psi beta-barrel
Superfamily: Barwin-like endoglucanases
Family: MLTA-like

Phyre2

PDB 2uve chain A

Region: 53 - 99
Aligned: 47
Modelled: 47
Confidence: 12.1%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:exopolygalacturonase;
PDBTitle: structure of yersinia enterocolitica family 282 exopolygalacturonase

Phyre2

PDB 2eei chain A

Region: 92 - 134
Aligned: 43
Modelled: 43
Confidence: 11.6%
Identity: 14%
PDB header:metal binding protein
Chain: A: PDB Molecule:pdz domain-containing protein 1;
PDBTitle: solution structure of second pdz domain of pdz domain2 containing protein 1

Phyre2

PDB 1mp9 chain A domain 2

Region: 60 - 123
Aligned: 62
Modelled: 64
Confidence: 10.5%
Identity: 15%
Fold: TBP-like
Superfamily: TATA-box binding protein-like
Family: TATA-box binding protein (TBP), C-terminal domain

Phyre2

PDB 1vsy chain 7

Region: 94 - 135
Aligned: 28
Modelled: 28
Confidence: 10.4%
Identity: 25%
PDB header:hydrolase
Chain: 7: PDB Molecule:proteasome activator blm10;
PDBTitle: proteasome activator complex

Phyre2

PDB 1cmi chain A

Region: 88 - 131
Aligned: 41
Modelled: 44
Confidence: 10.3%
Identity: 22%
Fold: DLC
Superfamily: DLC
Family: DLC

Phyre2

PDB 2dw4 chain A domain 3

Region: 27 - 116
Aligned: 80
Modelled: 90
Confidence: 9.3%
Identity: 6%
Fold: FAD-linked reductases, C-terminal domain
Superfamily: FAD-linked reductases, C-terminal domain
Family: L-aminoacid/polyamine oxidase

Phyre2

PDB 1ais chain A domain 1

Region: 60 - 113
Aligned: 53
Modelled: 53
Confidence: 9.1%
Identity: 17%
Fold: TBP-like
Superfamily: TATA-box binding protein-like
Family: TATA-box binding protein (TBP), C-terminal domain

Phyre2

PDB 3ol4 chain B

Region: 98 - 123
Aligned: 23
Modelled: 26
Confidence: 8.6%
Identity: 17%
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c

Phyre2

PDB 1w1h chain A

Region: 47 - 118
Aligned: 72
Modelled: 72
Confidence: 8.5%
Identity: 18%
Fold: PH domain-like barrel
Superfamily: PH domain-like
Family: Pleckstrin-homology domain (PH domain)

Phyre2

PDB 3iyn chain O

Region: 40 - 60
Aligned: 21
Modelled: 21
Confidence: 7.3%
Identity: 43%
PDB header:virus
Chain: O: PDB Molecule:hexon-associated protein;
PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5

Phyre2

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence	M	S	S	I	G	G	K	L	Q	K	S	L	H	K	I	R	A	G	A	L	G	I	P	L	P	K	H	I	Q	E	V	S	I	Q	Y	S	L	D	S	R	L	G	H	M	G	A	K	K	F	V	K	E	C	L	P	S	L	Y	Y	N
Secondary structure
SS confidence
Disorder	?	?																				?	?															?	?	?	?	?	?	?	?	?
Disorder confidence

	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence	N	Y	G	L	K	F	N	V	N	H	R	L	P	N	D	Q	T	P	T	F	S	I	I	S	N	N	K	V	I	Y	S	Y	D	M	R	S	K	Q	L	E	T	I	S	S	D	I	Q	K	A	L	K	E	L	H	H	E	S	S	P	E
Secondary structure
SS confidence
Disorder											?	?	?	?	?																						?	?																?	?	?	?	?	?	?
Disorder confidence

	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Sequence	N	I	K	E	A	H	K	Q	D	Y	S	P	P	S	N
Secondary structure
SS confidence
Disorder	?	?	?	?		?	?	?	?	?	?	?	?	?	?
Disorder confidence