Email l.a.kelley@imperial.ac.uk Description C6Y4A8 Date Sun Jul 8 11:45:05 BST 2012 Unique Job ID d854b83aab96e608

Summary

Top model

Image coloured by rainbow N → C terminus Close Jmol

Model (left) based on template c2jwmA_ Top template information PDB header:plant protein Chain: A: PDB Molecule:kalata-b7; PDBTitle: nmr spatial srtucture of ternary complex kalata b7/mn2+/dpc2 micelle Confidence and coverage Confidence: 10.0% Coverage: 19% 6 residues ( 19% of your sequence) have been modelled with 10.0% confidence by the single highest scoring template. You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library. Please note: You must be registered and logged in to use Phyrealarm. 3D viewing Interactive 3D view in Jmol

Sequence analysis

Secondary structure and disorder prediction

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2jwm chain A Region: 24 - 29 Aligned: 6 Modelled: 6 Confidence: 10.0% Identity: 83% PDB header:plant protein Chain: A: PDB Molecule:kalata-b7; PDBTitle: nmr spatial srtucture of ternary complex kalata b7/mn2+/dpc2 micelle Phyre2 PDB 3kye chain C Region: 3 - 31 Aligned: 28 Modelled: 29 Confidence: 8.9% Identity: 25% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:roadblock/lc7 domain, robl_lc7; PDBTitle: crystal structure of roadblock/lc7 domain from streptomyces2 avermitilis Phyre2 PDB 1k25 chain A domain 3 Region: 18 - 30 Aligned: 13 Modelled: 13 Confidence: 8.5% Identity: 62% Fold: Penicillin binding protein dimerisation domain Superfamily: Penicillin binding protein dimerisation domain Family: Penicillin binding protein dimerisation domain Phyre2 PDB 3e4h chain A Region: 24 - 29 Aligned: 6 Modelled: 6 Confidence: 8.1% Identity: 83% PDB header:plant protein Chain: A: PDB Molecule:varv peptide f; PDBTitle: crystal structure of the cyclotide varv f Phyre2 1 c2jwmA_ 2 c3kyeC_ 3 d1k25a3 4 c3e4hA_

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0