Phyre 2 Results for O13565

Email	l.a.kelley@imperial.ac.uk
Description	O13565
Date	Mon Jul 2 19:10:16 BST 2012
Unique Job ID	3a6a54370ab73fca

Summary

Top model

Image coloured by rainbow N → C terminus

Model (left) based on template d2cuqa1

Top template information

Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain

Confidence and coverage

Confidence:

30.2%

Coverage:

12 residues ( 6% of your sequence) have been modelled with 30.2% confidence by the single highest scoring template.

You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.

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3D viewing

Interactive 3D view in Jmol

Sequence analysis

Secondary structure and disorder prediction

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence M R N G K I L C C H C F Y N K G D H E D D E G G R S I E S L C A V N L A E G L N P R T N G P G K D S F S F S T S G S K P

Secondary structure

SS confidence

Disorder ? ? ? ?
? ? ? ? ? ? ? ? ? ?
?
? ? ? ? ? ? ?
? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence S S S L S F P V T S S M V S S T S S Y S S F L F L L V V N H L F S G R L R C G S P E F I I R S F T I T L G P L N H N I S

Secondary structure

SS confidence

Disorder ?
?
? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 130 . . . . . . . . . 140 . . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180

Sequence P F V F F H G N I S S L P D L L V W L C R S V R C K T S T F L V I E I G K T N E E A A S I I I L P K L P L D A C D V K S

Secondary structure

SS confidence

Disorder
?

Disorder confidence

. . . . . . .

Sequence S I I V G I L

Secondary structure

SS confidence

Disorder
? ? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered

Alpha helix

Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank	Aligned region

PDB 2cuq chain A domain 1

Region: 1 - 12
Aligned: 12
Modelled: 12
Confidence: 30.2%
Identity: 33%
Fold: Glucocorticoid receptor-like (DNA-binding domain)
Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
Family: LIM domain

Phyre2

PDB 4eaz chain C

Region: 122 - 134
Aligned: 13
Modelled: 10
Confidence: 8.1%
Identity: 46%
PDB header:transcription
Chain: C: PDB Molecule:transcription cofactor vestigial-like protein 1;
PDBTitle: vgll1-tead4 structure

Phyre2

PDB 1oe4 chain A

Region: 97 - 128
Aligned: 20
Modelled: 32
Confidence: 6.8%
Identity: 45%
Fold: Uracil-DNA glycosylase-like
Superfamily: Uracil-DNA glycosylase-like
Family: Single-strand selective monofunctional uracil-DNA glycosylase SMUG1

Phyre2

PDB 1s5l chain L

Region: 76 - 93
Aligned: 18
Modelled: 18
Confidence: 6.5%
Identity: 50%
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center

Phyre2

PDB 3arc chain L

Region: 76 - 93
Aligned: 18
Modelled: 18
Confidence: 6.5%
Identity: 50%
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution

Phyre2

PDB 4fby chain L

Region: 76 - 93
Aligned: 18
Modelled: 18
Confidence: 6.5%
Identity: 50%
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: fs x-ray diffraction of photosystem ii

Phyre2

PDB 3bz1 chain L

Region: 76 - 93
Aligned: 18
Modelled: 18
Confidence: 6.5%
Identity: 50%
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 1 of 2). this2 file contains first monomer of psii dimer

Phyre2

PDB 2axt chain L

Region: 76 - 93
Aligned: 18
Modelled: 18
Confidence: 6.5%
Identity: 50%
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus

Phyre2

PDB 3bz2 chain L

Region: 76 - 93
Aligned: 18
Modelled: 18
Confidence: 6.5%
Identity: 50%
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 2 of 2). this2 file contains second monomer of psii dimer

Phyre2

PDB 3prr chain L

Region: 76 - 93
Aligned: 18
Modelled: 18
Confidence: 6.5%
Identity: 50%
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer

Phyre2

PDB 4fby chain D

Region: 76 - 93
Aligned: 18
Modelled: 18
Confidence: 6.5%
Identity: 50%
PDB header:photosynthesis
Chain: D: PDB Molecule:photosystem ii d2 protein;
PDBTitle: fs x-ray diffraction of photosystem ii

Phyre2

PDB 1s5l chain L

Phyre2

PDB 2axt chain L

Region: 76 - 93
Aligned: 18
Modelled: 18
Confidence: 6.5%
Identity: 50%
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus

Phyre2

PDB 3prq chain L

Region: 76 - 93
Aligned: 18
Modelled: 18
Confidence: 6.5%
Identity: 50%
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer

Phyre2

PDB 3a0h chain L

Phyre2

PDB 2axt chain L domain 1

Region: 76 - 93
Aligned: 18
Modelled: 18
Confidence: 6.5%
Identity: 50%
Fold: Single transmembrane helix
Superfamily: Photosystem II reaction center protein L, PsbL
Family: PsbL-like

Phyre2

PDB 3a0b chain L

Phyre2

PDB 3a0h chain L

Phyre2

PDB 3kzi chain L

Phyre2

PDB 3a0b chain L

Phyre2

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence	M	R	N	G	K	I	L	C	C	H	C	F	Y	N	K	G	D	H	E	D	D	E	G	G	R	S	I	E	S	L	C	A	V	N	L	A	E	G	L	N	P	R	T	N	G	P	G	K	D	S	F	S	F	S	T	S	G	S	K	P
Secondary structure
SS confidence
Disorder	?	?	?	?											?	?	?	?	?	?	?	?	?	?															?		?	?	?	?	?	?	?							?	?	?	?	?	?	?
Disorder confidence

	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence	S	S	S	L	S	F	P	V	T	S	S	M	V	S	S	T	S	S	Y	S	S	F	L	F	L	L	V	V	N	H	L	F	S	G	R	L	R	C	G	S	P	E	F	I	I	R	S	F	T	I	T	L	G	P	L	N	H	N	I	S
Secondary structure
SS confidence
Disorder	?							?		?	?	?	?	?	?	?
Disorder confidence

	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence	P	F	V	F	F	H	G	N	I	S	S	L	P	D	L	L	V	W	L	C	R	S	V	R	C	K	T	S	T	F	L	V	I	E	I	G	K	T	N	E	E	A	A	S	I	I	I	L	P	K	L	P	L	D	A	C	D	V	K	S
Secondary structure
SS confidence
Disorder																																						?
Disorder confidence

	.	.	.	.	.	.	.
Sequence	S	I	I	V	G	I	L
Secondary structure
SS confidence
Disorder				?	?	?	?
Disorder confidence