Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionO13539
DateMon Jul 2 19:10:10 BST 2012
Unique Job ID204bab2d0bd130c3

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1nfoA_
Top template information
PDB header:lipid transport
Chain: A: PDB Molecule:apolipoprotein e2;
PDBTitle: apolipoprotein e2 (apoe2, d154a mutation)
Confidence and coverage
Confidence: 59.1% Coverage: 43%
113 residues ( 43% of your sequence) have been modelled with 59.1% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTKEEGRTYFESLCEEEQSLQESQTHLLNILDILSVLADPRSSDDLLTESLKKLPDLHRE
Secondary structure 
SS confidence 
Disorder  ?????
?
????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  LINSSIRLRYDKYQTREAQLLEDTKTGRDVAAGVQNPKSISEYYSTFEHLNRDTLRYINL
Secondary structure 
SS confidence 
Disorder 
????????????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  LKRLSVDLAKQVEVSDPSVTVYEMDKWVPSEKLQGILEQYCAPDTDIRGVDAQIKNYLDQ
Secondary structure 
SS confidence 
Disorder 
??
??
??
????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  IKMARAKFGLENKYSLKERLSTLTKELNHWRKEWDDIEMLMFGDDAHSMKKMIQKIDSLK
Secondary structure 
SS confidence 
Disorder 
?
??
?
Disorder confidence 
 
   .........250.........260.
Sequence  SEINAPSESYPVDKEGDIVLE
Secondary structure 
SS confidence 
Disorder 
?
?????????
???????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1nfo chain A

3D model

Region: 97 - 245
Aligned: 113
Modelled: 118
Confidence: 59.1%
Identity: 14%
PDB header:lipid transport
Chain: A: PDB Molecule:apolipoprotein e2;
PDBTitle: apolipoprotein e2 (apoe2, d154a mutation)

Phyre2

PDB 1eo0 chain A

3D model

Region: 27 - 73
Aligned: 47
Modelled: 47
Confidence: 39.7%
Identity: 15%
Fold: N-cbl like
Superfamily: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
Family: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70

Phyre2

PDB 2is9 chain A

3D model

Region: 147 - 243
Aligned: 84
Modelled: 97
Confidence: 35.1%
Identity: 14%
PDB header:transcription
Chain: A: PDB Molecule:defective in cullin neddylation protein 1;
PDBTitle: structure of yeast dcn-1

Phyre2

PDB 2eao chain A

3D model

Region: 174 - 249
Aligned: 66
Modelled: 76
Confidence: 30.7%
Identity: 23%
PDB header:signaling protein, transferase
Chain: A: PDB Molecule:ephrin type-b receptor 1;
PDBTitle: solution structure of the c-terminal sam-domain of mouse2 ephrin type-b receptor 1 precursor (ec 2.7.1.112)

Phyre2

PDB 2ebf chain X domain 2

3D model

Region: 214 - 242
Aligned: 29
Modelled: 29
Confidence: 27.4%
Identity: 7%
Fold: EreA/ChaN-like
Superfamily: EreA/ChaN-like
Family: PMT domain-like

Phyre2

PDB 2dk4 chain A domain 1

3D model

Region: 220 - 246
Aligned: 27
Modelled: 27
Confidence: 24.7%
Identity: 26%
Fold: LEM/SAP HeH motif
Superfamily: PRP4-like
Family: PRP4-like

Phyre2

PDB 1hjr chain A

3D model

Region: 195 - 234
Aligned: 40
Modelled: 27
Confidence: 22.8%
Identity: 23%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: RuvC resolvase

Phyre2

PDB 1n0f chain F

3D model

Region: 212 - 260
Aligned: 44
Modelled: 49
Confidence: 22.5%
Identity: 20%
PDB header:biosynthetic protein
Chain: F: PDB Molecule:protein mraz;
PDBTitle: crystal structure of a cell division and cell wall2 biosynthesis protein upf0040 from mycoplasma pneumoniae:3 indication of a novel fold with a possible new conserved4 sequence motif

Phyre2

PDB 1lw3 chain A

3D model

Region: 114 - 164
Aligned: 50
Modelled: 49
Confidence: 22.1%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:myotubularin-related protein 2;
PDBTitle: crystal structure of myotubularin-related protein 22 complexed with phosphate

Phyre2

PDB 3teq chain B

3D model

Region: 194 - 221
Aligned: 28
Modelled: 28
Confidence: 21.0%
Identity: 32%
PDB header:signaling protein
Chain: B: PDB Molecule:stromal interaction molecule 1;
PDBTitle: crystal structure of soar domain

Phyre2

PDB 3qf7 chain D

3D model

Region: 8 - 34
Aligned: 27
Modelled: 27
Confidence: 20.7%
Identity: 41%
PDB header:hydrolase
Chain: D: PDB Molecule:mre11;
PDBTitle: the mre11:rad50 complex forms an atp dependent molecular clamp in dna2 double-strand break repair

Phyre2

PDB 3gbg chain A

3D model

Region: 174 - 233
Aligned: 53
Modelled: 60
Confidence: 19.9%
Identity: 8%
PDB header:transcription regulator
Chain: A: PDB Molecule:tcp pilus virulence regulatory protein;
PDBTitle: crystal structure of toxt from vibrio cholerae o395

Phyre2

PDB 2lta chain A

3D model

Region: 171 - 185
Aligned: 15
Modelled: 15
Confidence: 19.6%
Identity: 40%
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed protein;
PDBTitle: solution nmr structure of de novo designed protein, rossmann 3x1 fold,2 northeast structural genomics consortium target or157

Phyre2

PDB 2c5i chain T

3D model

Region: 17 - 82
Aligned: 66
Modelled: 66
Confidence: 18.7%
Identity: 21%
PDB header:protein transport
Chain: T: PDB Molecule:t-snare affecting a late golgi compartment
PDBTitle: n-terminal domain of tlg1 complexed with n-terminus of2 vps51 in distorted conformation

Phyre2

PDB 1zsq chain A domain 2

3D model

Region: 114 - 164
Aligned: 50
Modelled: 51
Confidence: 17.7%
Identity: 24%
Fold: (Phosphotyrosine protein) phosphatases II
Superfamily: (Phosphotyrosine protein) phosphatases II
Family: Myotubularin-like phosphatases

Phyre2

PDB 1wq6 chain A

3D model

Region: 208 - 235
Aligned: 23
Modelled: 51
Confidence: 17.4%
Identity: 22%
PDB header:oncoprotein
Chain: A: PDB Molecule:aml1-eto;
PDBTitle: the tetramer structure of the nervy homolgy two (nhr2) domain of aml1-2 eto is critical for aml1-eto's activity

Phyre2

PDB 1zsq chain A

3D model

Region: 114 - 164
Aligned: 50
Modelled: 51
Confidence: 16.5%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:myotubularin-related protein 2;
PDBTitle: crystal structure of mtmr2 in complex with2 phosphatidylinositol 3-phosphate

Phyre2

PDB 1n0e chain A

3D model

Region: 212 - 260
Aligned: 44
Modelled: 51
Confidence: 16.4%
Identity: 20%
Fold: Double-split beta-barrel
Superfamily: AbrB/MazE/MraZ-like
Family: Hypothetical protein MraZ

Phyre2

PDB 3t4a chain G

3D model

Region: 179 - 194
Aligned: 16
Modelled: 16
Confidence: 16.1%
Identity: 50%
PDB header:immune system
Chain: G: PDB Molecule:fibrinogen-binding protein;
PDBTitle: structure of a truncated form of staphylococcal complement inhibitor b2 bound to human c3c at 3.4 angstrom resolution

Phyre2

PDB 3ter chain A

3D model

Region: 194 - 221
Aligned: 28
Modelled: 28
Confidence: 15.5%
Identity: 25%
PDB header:metal binding protein
Chain: A: PDB Molecule:mammalian stromal interaction molecule-1;
PDBTitle: crystal structure of soar domain with inhibition helix from c. elegans

Phyre2
1
c1nfoA_
2
d1eo0a_
3
c2is9A_
4
c2eaoA_
5
d2ebfx2
6
d2dk4a1
7
d1hjra_
8
c1n0fF_
9
c1lw3A_
10
c3teqB_
11
c3qf7D_
12
c3gbgA_
13
c2ltaA_
14
c2c5iT_
15
d1zsqa2
16
c1wq6A_
17
c1zsqA_
18
d1n0ea_
19
c3t4aG_
20
c3terA_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
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46
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53
54
55
56
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58
59
60
61
62
63
64
65
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67
68
69
70
71
72
73
74
75
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1nfoA_
59.1 14 PDB header:lipid transport
Chain: A: PDB Molecule:apolipoprotein e2;
PDBTitle: apolipoprotein e2 (apoe2, d154a mutation)
2d1eo0a_
39.7 15 Fold:N-cbl like
Superfamily:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
Family:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
3c2is9A_
35.1 14 PDB header:transcription
Chain: A: PDB Molecule:defective in cullin neddylation protein 1;
PDBTitle: structure of yeast dcn-1
4c2eaoA_
30.7 23 PDB header:signaling protein, transferase
Chain: A: PDB Molecule:ephrin type-b receptor 1;
PDBTitle: solution structure of the c-terminal sam-domain of mouse2 ephrin type-b receptor 1 precursor (ec 2.7.1.112)
5d2ebfx2
27.4 7 Fold:EreA/ChaN-like
Superfamily:EreA/ChaN-like
Family:PMT domain-like
6d2dk4a1
24.7 26 Fold:LEM/SAP HeH motif
Superfamily:PRP4-like
Family:PRP4-like
7d1hjra_
22.8 23 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:RuvC resolvase
8c1n0fF_
22.5 20 PDB header:biosynthetic protein
Chain: F: PDB Molecule:protein mraz;
PDBTitle: crystal structure of a cell division and cell wall2 biosynthesis protein upf0040 from mycoplasma pneumoniae:3 indication of a novel fold with a possible new conserved4 sequence motif
9c1lw3A_
22.1 24 PDB header:hydrolase
Chain: A: PDB Molecule:myotubularin-related protein 2;
PDBTitle: crystal structure of myotubularin-related protein 22 complexed with phosphate
10c3teqB_
21.0 32 PDB header:signaling protein
Chain: B: PDB Molecule:stromal interaction molecule 1;
PDBTitle: crystal structure of soar domain
11c3qf7D_
20.7 41 PDB header:hydrolase
Chain: D: PDB Molecule:mre11;
PDBTitle: the mre11:rad50 complex forms an atp dependent molecular clamp in dna2 double-strand break repair
12c3gbgA_
19.9 8 PDB header:transcription regulator
Chain: A: PDB Molecule:tcp pilus virulence regulatory protein;
PDBTitle: crystal structure of toxt from vibrio cholerae o395
13c2ltaA_
19.6 40 PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed protein;
PDBTitle: solution nmr structure of de novo designed protein, rossmann 3x1 fold,2 northeast structural genomics consortium target or157
14c2c5iT_
18.7 21 PDB header:protein transport
Chain: T: PDB Molecule:t-snare affecting a late golgi compartment
PDBTitle: n-terminal domain of tlg1 complexed with n-terminus of2 vps51 in distorted conformation
15d1zsqa2
17.7 24 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Myotubularin-like phosphatases
16c1wq6A_
17.4 22 PDB header:oncoprotein
Chain: A: PDB Molecule:aml1-eto;
PDBTitle: the tetramer structure of the nervy homolgy two (nhr2) domain of aml1-2 eto is critical for aml1-eto's activity
17c1zsqA_
16.5 24 PDB header:hydrolase
Chain: A: PDB Molecule:myotubularin-related protein 2;
PDBTitle: crystal structure of mtmr2 in complex with2 phosphatidylinositol 3-phosphate
18d1n0ea_
16.4 20 Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:Hypothetical protein MraZ
19c3t4aG_
16.1 50 PDB header:immune system
Chain: G: PDB Molecule:fibrinogen-binding protein;
PDBTitle: structure of a truncated form of staphylococcal complement inhibitor b2 bound to human c3c at 3.4 angstrom resolution
20c3terA_
15.5 25 PDB header:metal binding protein
Chain: A: PDB Molecule:mammalian stromal interaction molecule-1;
PDBTitle: crystal structure of soar domain with inhibition helix from c. elegans
21c2yf0A_
not modelled 15.3 24 PDB header:hydrolase
Chain: A: PDB Molecule:myotubularin-related protein 6;
PDBTitle: human myotubularin related protein 6 (mtmr6)
22d1d4oa_
not modelled 14.7 18 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Transhydrogenase domain III (dIII)
23c2qffA_
not modelled 14.7 38 PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of staphylococcal complement inhibitor
24c3ha4C_
not modelled 14.2 19 PDB header:unknown function
Chain: C: PDB Molecule:mix1;
PDBTitle: crystal structure of the type one membrane protein mix1 from2 leishmania
25c1pt9B_
not modelled 14.1 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial;
PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue
26d1pnoa_
not modelled 13.9 22 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Transhydrogenase domain III (dIII)
27c2bruC_
not modelled 13.0 27 PDB header:oxidoreductase
Chain: C: PDB Molecule:nad(p) transhydrogenase subunit beta;
PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase
28c3fmyA_
not modelled 12.1 9 PDB header:dna binding protein
Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa
PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021)
29c3f02A_
not modelled 11.9 12 PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:neuroserpin;
PDBTitle: cleaved human neuroserpin
30d1ft8e_
not modelled 11.7 8 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Non-canonical RBD domain
31c3kkaD_
not modelled 11.5 21 PDB header:transferase
Chain: D: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: co-crystal structure of the sam domains of epha1 and epha2
32c1i25A_
not modelled 11.4 40 PDB header:toxin
Chain: A: PDB Molecule:huwentoxin-ii;
PDBTitle: three dimensional solution structure of huwentoxin-ii by 2d2 1h-nmr
33d1i25a_
not modelled 11.4 40 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Spider toxins
34c2yxhB_
not modelled 11.0 11 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:mazg-related protein;
PDBTitle: crystal structure of mazg-related protein from thermotoga maritima
35d2icta1
not modelled 10.9 11 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
36d1gs9a_
not modelled 10.9 13 Fold:Four-helical up-and-down bundle
Superfamily:Apolipoprotein
Family:Apolipoprotein
37d1idra_
not modelled 10.7 5 Fold:Globin-like
Superfamily:Globin-like
Family:Truncated hemoglobin
38c2jqqA_
not modelled 10.5 26 PDB header:protein transport
Chain: A: PDB Molecule:conserved oligomeric golgi complex subunit 2;
PDBTitle: solution structure of saccharomyces cerevisiae conserved2 oligomeric golgi subunit 2 protein (cog2p)
39c2e8nA_
not modelled 10.3 22 PDB header:transferase, signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: solution structure of the c-terminal sam-domain of ephaa2:2 ephrin type-a receptor 2 precursor (ec 2.7.10.1)
40d1wmhb_
not modelled 10.1 9 Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
41c2v4hA_
not modelled 10.0 29 PDB header:transcription
Chain: A: PDB Molecule:nf-kappa-b essential modulator;
PDBTitle: nemo cc2-lz domain - 1d5 darpin complex
42d1z9ha1
not modelled 9.4 15 Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
43c2q0oC_
not modelled 9.2 25 PDB header:transcription
Chain: C: PDB Molecule:probable transcriptional repressor tram;
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing
44c2fjrB_
not modelled 9.0 10 PDB header:transcription regulator
Chain: B: PDB Molecule:repressor protein ci;
PDBTitle: crystal structure of bacteriophage 186
45c3cecA_
not modelled 9.0 12 PDB header:transcription
Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system;
PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution
46c1b0xA_
not modelled 9.0 17 PDB header:transferase
Chain: A: PDB Molecule:protein (epha4 receptor tyrosine kinase);
PDBTitle: the crystal structure of an eph receptor sam domain reveals2 a mechanism for modular dimerization.
47d1b0xa_
not modelled 9.0 17 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
48c2ktrA_
not modelled 8.9 11 PDB header:signaling protein, transport protein
Chain: A: PDB Molecule:sequestosome-1;
PDBTitle: nmr structure of p62 pb1 dimer determined based on pcs
49d1knxa1
not modelled 8.8 14 Fold:MurF and HprK N-domain-like
Superfamily:HprK N-terminal domain-like
Family:HPr kinase/phoshatase HprK N-terminal domain
50c2qyaA_
not modelled 8.8 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized conserved protein;
PDBTitle: crystal structure of an uncharacterized conserved protein2 from methanopyrus kandleri
51c2riwA_
not modelled 8.7 13 PDB header:signaling protein
Chain: A: PDB Molecule:thyroxine-binding globulin;
PDBTitle: the reactive loop cleaved human thyroxine binding globulin complexed2 with thyroxine
52c2zvnF_
not modelled 8.6 29 PDB header:signaling protein/transcription
Chain: F: PDB Molecule:nf-kappa-b essential modulator;
PDBTitle: nemo cozi domain incomplex with diubiquitin in p2121212 space group
53d1pzra_
not modelled 8.5 22 Fold:HLH-like
Superfamily:Docking domain B of the erythromycin polyketide synthase (DEBS)
Family:Docking domain B of the erythromycin polyketide synthase (DEBS)
54c2ebyA_
not modelled 8.2 18 PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq;
PDBTitle: crystal structure of a hypothetical protein from e. coli
55c2hx1D_
not modelled 8.0 28 PDB header:hydrolase
Chain: D: PDB Molecule:predicted sugar phosphatases of the had
PDBTitle: crystal structure of possible sugar phosphatase, had2 superfamily (zp_00311070.1) from cytophaga hutchinsonii3 atcc 33406 at 2.10 a resolution
56c3vejB_
not modelled 7.9 33 PDB header:protein binding
Chain: B: PDB Molecule:ubiquitin-like protein mdy2;
PDBTitle: crystal structure of the get5 carboxyl domain from s. cerevisiae
57d1ioka2
not modelled 7.7 14 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:GroEL-like chaperone, apical domain
58c1ow5A_
not modelled 7.7 19 PDB header:transferase
Chain: A: PDB Molecule:serine/threonine-protein kinase ste11;
PDBTitle: nmr structure of the saccharomyces cerevisiae sam (sterile2 alpha motif) domain
59d1ow5a_
not modelled 7.7 19 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
60c2lnzA_
not modelled 7.6 33 PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin-like protein mdy2;
PDBTitle: solution structure of the get5 carboxyl domain from s. cerevisiae
61c2q2kA_
not modelled 7.6 18 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: structure of nucleic-acid binding protein
62d2nr5a1
not modelled 7.6 17 Fold:Ferritin-like
Superfamily:SO2669-like
Family:SO2669-like
63c3mlfC_
not modelled 7.5 16 PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: putative transcriptional regulator from staphylococcus aureus.
64d1ydxa1
not modelled 7.4 12 Fold:DNA methylase specificity domain
Superfamily:DNA methylase specificity domain
Family:Type I restriction modification DNA specificity domain
65c2h4bC_
not modelled 7.4 20 PDB header:de novo protein
Chain: C: PDB Molecule:pancreatic hormone;
PDBTitle: cis-4-aminomethylphenylazobenzoic acid-avian pancreatic2 polypeptide
66c2h3sB_
not modelled 7.4 20 PDB header:de novo protein
Chain: B: PDB Molecule:pancreatic hormone;
PDBTitle: cis-azobenzene-avian pancreatic polypeptide bound to dpc2 micelles
67c2h4bD_
not modelled 7.4 20 PDB header:de novo protein
Chain: D: PDB Molecule:pancreatic hormone;
PDBTitle: cis-4-aminomethylphenylazobenzoic acid-avian pancreatic2 polypeptide
68c3vp8B_
not modelled 7.4 14 PDB header:transcription
Chain: B: PDB Molecule:general transcriptional corepressor tup1;
PDBTitle: crystal structure of the n-terminal domain of the yeast general2 corepressor tup1p
69d1b4fa_
not modelled 7.4 25 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
70c3mtuE_
not modelled 7.3 30 PDB header:contractile protein
Chain: E: PDB Molecule:head morphogenesis protein, tropomyosin alpha-1 chain;
PDBTitle: structure of the tropomyosin overlap complex from chicken smooth2 muscle
71d1whua_
not modelled 7.2 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
Family:Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
72c3n8uB_
not modelled 7.0 16 PDB header:hydrolase
Chain: B: PDB Molecule:imelysin peptidase;
PDBTitle: crystal structure of an imelysin peptidase (bacova_03801) from2 bacteroides ovatus at 1.44 a resolution
73c2ns6A_
not modelled 7.0 24 PDB header:hydrolase
Chain: A: PDB Molecule:mobilization protein a;
PDBTitle: crystal structure of the minimal relaxase domain of moba2 from plasmid r1162
74d1ft8a2
not modelled 6.9 7 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Non-canonical RBD domain
75c2h3tB_
not modelled 6.8 20 PDB header:de novo protein
Chain: B: PDB Molecule:pancreatic hormone;
PDBTitle: trans-(4-aminomethyl)phenylazobenzoic acid-app bound to dpc2 micelles
76c3odsA_
not modelled 6.8 28 PDB header:protein binding
Chain: A: PDB Molecule:symplekin;
PDBTitle: crystal structure of the k185a mutant of the n-terminal domain of2 human symplekin
77d1ykhb1
not modelled 6.8 17 Fold:Mediator hinge subcomplex-like
Superfamily:Mediator hinge subcomplex-like
Family:CSE2-like
78d1rkua_
not modelled 6.7 17 Fold:HAD-like
Superfamily:HAD-like
Family:Homoserine kinase ThrH
79c2bf9A_
not modelled 6.7 20 PDB header:hormone
Chain: A: PDB Molecule:pancreatic hormone;
PDBTitle: anisotropic refinement of avian (turkey) pancreatic2 polypeptide at 0.99 angstroms resolution.
80c2ppxA_
not modelled 6.7 9 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1735;
PDBTitle: crystal structure of a hth xre-family like protein from agrobacterium2 tumefaciens
81d2ppxa1
not modelled 6.7 9 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
82d2hbka1
not modelled 6.5 29 Fold:SAM domain-like
Superfamily:HRDC-like
Family:EXOSC10 HRDC domain-like
83c2kg5A_
not modelled 6.5 12 PDB header:signaling protein
Chain: A: PDB Molecule:arf-gap, rho-gap domain, ank repeat and ph
PDBTitle: nmr solution structure of arap3-sam
84c3o2qD_
not modelled 6.4 28 PDB header:hydrolase
Chain: D: PDB Molecule:symplekin;
PDBTitle: crystal structure of the human symplekin-ssu72-ctd phosphopeptide2 complex
85d1rkqa_
not modelled 6.4 24 Fold:HAD-like
Superfamily:HAD-like
Family:Predicted hydrolases Cof
86c1vdiA_
not modelled 6.4 19 PDB header:contractile protein
Chain: A: PDB Molecule:troponin i, fast skeletal muscle;
PDBTitle: solution structure of actin-binding domain of troponin in2 ca2+-free state
87c2ef8A_
not modelled 6.3 19 PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcription factor;
PDBTitle: crystal structure of c.ecot38is
88d1r9da_
not modelled 6.1 25 Fold:PFL-like glycyl radical enzymes
Superfamily:PFL-like glycyl radical enzymes
Family:PFL-like
89c1tz5A_
not modelled 6.1 30 PDB header:hormone/growth factor
Chain: A: PDB Molecule:chimera of pancreatic hormone and neuropeptide y;
PDBTitle: [pnpy19-23]-hpp bound to dpc micelles
90c3l9aX_
not modelled 6.1 30 PDB header:structural genomics, unknown function
Chain: X: PDB Molecule:uncharacterized protein;
PDBTitle: structure of the c-terminal domain from a streptococcus2 mutans hypothetical
91c3aq8A_
not modelled 6.0 8 PDB header:oxygen binding
Chain: A: PDB Molecule:group 1 truncated hemoglobin;
PDBTitle: crystal structure of truncated hemoglobin from tetrahymena pyriformis,2 q46e mutant, fe(iii) form
92c3odrA_
not modelled 6.0 28 PDB header:protein binding
Chain: A: PDB Molecule:symplekin;
PDBTitle: crystal structure of the n-terminal domain of human symplekin
93c2d7cD_
not modelled 5.9 24 PDB header:protein transport
Chain: D: PDB Molecule:rab11 family-interacting protein 3;
PDBTitle: crystal structure of human rab11 in complex with fip3 rab-2 binding domain
94d1h9aa1
not modelled 5.9 40 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
95c3h8mB_
not modelled 5.8 18 PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 7;
PDBTitle: sam domain of human ephrin type-a receptor 7 (epha7)
96d2grrb1
not modelled 5.8 9 Fold:alpha-alpha superhelix
Superfamily:Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain
Family:Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain
97c3u88B_
not modelled 5.7 16 PDB header:transcription
Chain: B: PDB Molecule:menin;
PDBTitle: crystal structure of human menin in complex with mll1 and ledgf
98c3nkuA_
not modelled 5.7 40 PDB header:protein transport
Chain: A: PDB Molecule:drra;
PDBTitle: crystal structure of the n-terminal domain of drra/sidm from2 legionella pneumophila
99d2hwna1
not modelled 5.7 17 Fold:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
Superfamily:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
Family:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit

Binding site prediction 

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