Phyre 2 Results for O13529

Email	l.a.kelley@imperial.ac.uk
Description	O13529
Date	Mon Jul 2 19:10:08 BST 2012
Unique Job ID	5ac667eaf1701a94

Summary

Top model

Image coloured by rainbow N → C terminus

Model (left) based on template c3k1qB_

Top template information

PDB header:virus
Chain: B: PDB Molecule:vp3a, the building block protein of inner shell;
PDBTitle: backbone model of an aquareovirus virion by cryo-electron2 microscopy and bioinformatics

Confidence and coverage

Confidence:

54.4%

Coverage:

46%

70 residues ( 46% of your sequence) have been modelled with 54.4% confidence by the single highest scoring template.

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3D viewing

Interactive 3D view in Jmol

Sequence analysis

Secondary structure and disorder prediction

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence M N R S F H F L I K Y I Y I H V L L V F Y F H I K Q Q A I M P F F I F F F S S F D G L S F D L R V V A F L A K H V F V G

Secondary structure

SS confidence

Disorder ? ? ? ?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence V C S P F F V V G F F G S S R V V V T E W L S K L V L P P P P V S I T Q V F S L S R K R G E F S S G Y I L I I N P Y K S

Secondary structure

SS confidence

Disorder
? ?

Disorder confidence

. . . . . . . . . 130 . . . . . . . . . 140 . . . . . . . . . 150 .

Sequence F L R S L L D F S I F N N T A K N K S S T F T L N L E D V S K

Secondary structure

SS confidence

Disorder
? ?
?
?
?
?
? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered

Alpha helix

Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank	Aligned region

PDB 3k1q chain B

Region: 76 - 146
Aligned: 70
Modelled: 71
Confidence: 54.4%
Identity: 33%
PDB header:virus
Chain: B: PDB Molecule:vp3a, the building block protein of inner shell;
PDBTitle: backbone model of an aquareovirus virion by cryo-electron2 microscopy and bioinformatics

Phyre2

PDB 3k1q chain C

Region: 76 - 146
Aligned: 70
Modelled: 71
Confidence: 49.5%
Identity: 33%
PDB header:virus
Chain: C: PDB Molecule:vp3b, the building block protein of inner shell;
PDBTitle: backbone model of an aquareovirus virion by cryo-electron2 microscopy and bioinformatics

Phyre2

PDB 2cse chain W

Region: 76 - 146
Aligned: 70
Modelled: 71
Confidence: 25.4%
Identity: 23%
PDB header:virus
Chain: W: PDB Molecule:major core protein lambda 1;
PDBTitle: features of reovirus outer-capsid protein mu1 revealed by2 electron and image reconstruction of the virion at 7.0-a3 resolution

Phyre2

PDB 3lpe chain F

Region: 109 - 130
Aligned: 22
Modelled: 71
Confidence: 20.7%
Identity: 32%
PDB header:transferase
Chain: F: PDB Molecule:dna-directed rna polymerase subunit e'';
PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii

Phyre2

PDB 1ryq chain A

Region: 109 - 130
Aligned: 22
Modelled: 22
Confidence: 17.8%
Identity: 9%
Fold: Rubredoxin-like
Superfamily: RNA polymerase subunits
Family: RpoE2-like

Phyre2

PDB 1p8b chain A

Region: 60 - 65
Aligned: 6
Modelled: 6
Confidence: 13.9%
Identity: 100%
Fold: Knottins (small inhibitors, toxins, lectins)
Superfamily: omega toxin-like
Family: Albumin 1

Phyre2

PDB 1ju8 chain A

Region: 60 - 65
Aligned: 6
Modelled: 6
Confidence: 13.0%
Identity: 83%
Fold: Knottins (small inhibitors, toxins, lectins)
Superfamily: omega toxin-like
Family: Albumin 1

Phyre2

PDB 2q22 chain A domain 1

Region: 46 - 92
Aligned: 42
Modelled: 47
Confidence: 12.8%
Identity: 17%
Fold: Ava3019-like
Superfamily: Ava3019-like
Family: Ava3019-like

Phyre2

PDB 1v95 chain A

Region: 85 - 125
Aligned: 38
Modelled: 47
Confidence: 10.8%
Identity: 24%
Fold: Anticodon-binding domain-like
Superfamily: Class II aaRS ABD-related
Family: Anticodon-binding domain of Class II aaRS

Phyre2

PDB 1ucv chain A

Region: 72 - 88
Aligned: 17
Modelled: 17
Confidence: 8.8%
Identity: 35%
Fold: SAM domain-like
Superfamily: SAM/Pointed domain
Family: SAM (sterile alpha motif) domain

Phyre2

PDB 1okg chain A domain 3

Region: 70 - 91
Aligned: 16
Modelled: 22
Confidence: 7.6%
Identity: 50%
Fold: FKBP-like
Superfamily: FKBP-like
Family: 3-mercaptopyruvate sulfurtransferase, C-terminal domain

Phyre2

PDB 1v54 chain D

Region: 65 - 96
Aligned: 32
Modelled: 22
Confidence: 7.0%
Identity: 19%
Fold: Single transmembrane helix
Superfamily: Mitochondrial cytochrome c oxidase subunit IV
Family: Mitochondrial cytochrome c oxidase subunit IV

Phyre2

PDB 2y69 chain Q

Region: 65 - 96
Aligned: 32
Modelled: 32
Confidence: 6.6%
Identity: 19%
PDB header:electron transport
Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen

Phyre2

PDB 2l27 chain B

Region: 90 - 102
Aligned: 13
Modelled: 13
Confidence: 6.1%
Identity: 46%
PDB header:membrane protein, peptide binding protei
Chain: B: PDB Molecule:peptide agonist;
PDBTitle: nmr structure of the ecd1 of crf-r1 in complex with a peptide agonist

Phyre2

PDB 1v0d chain A

Region: 115 - 132
Aligned: 17
Modelled: 18
Confidence: 5.9%
Identity: 47%
PDB header:hydrolase
Chain: A: PDB Molecule:dna fragmentation factor 40 kda subunit;
PDBTitle: crystal structure of caspase-activated dnase (cad)

Phyre2

PDB 1v0d chain A

Region: 115 - 132
Aligned: 17
Modelled: 18
Confidence: 5.9%
Identity: 47%
Fold: His-Me finger endonucleases
Superfamily: His-Me finger endonucleases
Family: Caspase-activated DNase, CAD (DffB, DFF40)

Phyre2

PDB 2rmf chain A

Region: 90 - 102
Aligned: 13
Modelled: 13
Confidence: 5.5%
Identity: 46%
PDB header:hormone
Chain: A: PDB Molecule:urocortin;
PDBTitle: human urocortin 1

Phyre2

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence	M	N	R	S	F	H	F	L	I	K	Y	I	Y	I	H	V	L	L	V	F	Y	F	H	I	K	Q	Q	A	I	M	P	F	F	I	F	F	F	S	S	F	D	G	L	S	F	D	L	R	V	V	A	F	L	A	K	H	V	F	V	G
Secondary structure
SS confidence
Disorder	?	?	?	?
Disorder confidence

	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence	V	C	S	P	F	F	V	V	G	F	F	G	S	S	R	V	V	V	T	E	W	L	S	K	L	V	L	P	P	P	P	V	S	I	T	Q	V	F	S	L	S	R	K	R	G	E	F	S	S	G	Y	I	L	I	I	N	P	Y	K	S
Secondary structure
SS confidence
Disorder																																										?	?
Disorder confidence

	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Sequence	F	L	R	S	L	L	D	F	S	I	F	N	N	T	A	K	N	K	S	S	T	F	T	L	N	L	E	D	V	S	K
Secondary structure
SS confidence
Disorder												?	?			?			?						?		?		?	?	?
Disorder confidence