Job Description P33594 Confidence 97.75% Date Thu Jan 5 11:52:19 GMT 2012 Rank 110 Aligned Residues 146 % Identity 14% Template c2cvhB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:dna repair and recombination protein radb; PDBTitle: crystal structure of the radb recombinase Resolution 2.20 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	S	G	E	T	V	A	L	L	G	R	S	G	C	G	K	S	T	L	A	R	L	L	V	G	L	E	S	P	A	Q	G	N	I	S	W	R	G	E	P	L	A	K	L	N	R	A	Q	R	K	A	F	R	R	D	I	Q	M	V	F	Q	D	S	I	S	A	V	N	P	R	K	T	V	R	E	I	L	R	E
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	A	P	G	V	L	T	Q	V	Y	G	P	Y	A	S	G	K	T	T	L	A	L	Q	T	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	G	K	K	V	A	Y
Template Known Secondary structure		B		T	T	S							S	T	T	S	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.																																															.	.	.	.	.	.	.	50
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.									.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.
Query Sequence		P	M	R	H	L	L	S	L	K	K	S	E	Q	L	A	R	A	S	E	M	L	K	A	V	D	L	D	D	S	V	L	D	K	R	P	P	Q	L	S	G	G	Q	L	Q	R	V	C	L	A	R	A	L	A	V	E	P	K	L	L	I	L	D	E	A	V	S	N	L	.	.	.	.	.	.	.	.	D	L	V	L
Query Conservation																																																																						.	.	.	.	.	.	.	.
Alig confidence																																																																						.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	D	T	E	G	G	F	S	P	E	R	L	V	Q	M	A	E	T	R	G	L	N	P	E	E	A	L	S	R	F	I	L	F	T	P	S	D	F	K	E	Q	R	R	V	I	G	S	L	K	K	T	V	D	S	N	F	A	L	V	V	V	D	S	I	T	A	H	Y	R	A	E	E	N	R	S	G	L	I	A	E
Template Known Secondary structure				S	S	S														T	T																	S	S																T	T										S		S	B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.														.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	A	G	V	I	R	L	L	K	K	L	Q	Q	Q	F	G	T	A	C	L	F	I	T	H	D	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	E	R	F	C	Q	R	V	M	V	M	D
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	S	R	Q	L	Q	V	L	L	W	I	A	R	K	H	N	I	P	V	I	V	I	N	Q	V	H	F	D	S	R	T	E	M	T	K	P	V	A	E	Q	T	L	G	Y	R	C	K	D	I	L	R	L	D
Template Known Secondary structure																	T									S	S	S	S			S	S				S	S		S	T	T						S
Template Predicted Secondary structure
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions