Job Description P77768 Confidence 46.27% Date Thu Jan 5 12:32:41 GMT 2012 Rank 28 Aligned Residues 57 % Identity 5% Template c3t72o_ PDB info PDB header:transcription/dna Chain: O: PDB Molecule:pho box dna (strand 1); PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex Resolution 4.33 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.					.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.
Query SS confidence																																			.	.	.	.
Query Sequence		E	K	E	K	L	M	T	I	A	D	R	L	R	E	E	G	A	M	Q	G	K	H	E	E	A	L	R	I	A	Q	E	M	L	.	.	.	.	D	R	G	L	D	R	E	L	V	M	M	V	T	R	L	S	P	D	D	L	I	A	Q	S	H
Query Conservation																																			.	.	.	.
Alig confidence																			.																.	.	.	.
Template Conservation																			.
Template Sequence		M	D	S	A	T	T	E	S	L	R	A	A	T	H	D	V	L	.	A	G	L	T	A	R	E	A	K	V	L	R	M	R	F	G	I	D	M	N	T	D	Y	T	L	E	E	V	G	K	Q	F	D	V	T	R	E	R	I	R	Q	I	E	A
Template Known Secondary structure																			.			S								T	T	T	T	T	S	S	S	S		S												S	S
Template Predicted Secondary structure																			.
Template SS confidence
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.		.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions