Job Description P76396 Confidence 99.11% Date Thu Jan 5 12:22:36 GMT 2012 Rank 30 Aligned Residues 186 % Identity 13% Template c3v4pB_ PDB info PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-7; PDBTitle: crystal structure of a4b7 headpiece complexed with fab act-1 Resolution 3.15 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	A	S	N	P	E	P	R	C	P	C	I	L	L	L	D	V	S	G	S	M	N	G	R	P	I	N	E	L	N	A	G	L	V	T	F	R	D	E	L	L	A	D	P	L	A	L	K	R	V	E	L	G	I	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.
Template Sequence		F	L	R	A	E	G	Y	P	V	D	L	Y	Y	L	M	D	L	S	Y	S	M	.	K	D	D	L	E	R	V	R	Q	L	G	H	A	L	L	V	R	L	Q	E	V	T	H	S	V	R	I	G	F	G	S	F	V	D	K	T	V	L	P	F	V	S	T	V	P	S	K	L	R	H	P	C	P	T	R	L	E	R
Template Known Secondary structure						S	S												S	G	G	G	.								T	T										T	T	T		S													S	S	T	T	T	S											S	S		T	T	S
Template Predicted Secondary structure																							.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
								68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																																			.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																																																			.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	F	G	P	V	H	V	E	Q	P	F	T	S	A	A	N	F	F	P	P	I	L	F	A	Q	G	D	T	P	M	G	A	A	I	T	K	A	L	D	M	V	E	E	R	K	R	E	Y	R	A	N	G	I	S	Y	Y	R	P	W	I	F	L	I	T	D	G	A	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.																																																																			.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																																			.	.	.														.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.
Template Sequence		C	Q	S	P	F	S	F	H	H	V	L	S	L	T	G	D	A	Q	A	F	E	R	E	V	G	R	Q	S	V	S	G	N	L	D	S	P	E	G	G	F	D	A	I	L	Q	A	A	L	C	Q	E	Q	I	G	W	R	.	.	.	N	V	S	R	L	L	V	F	T	S	D	D	T	F	H	T	A	G	D	G	K
Template Known Secondary structure							S									S		S								T	T							S	S	S	S	B																	T			.	.	.	S	S									S	S		B			T	T	G	G	G
Template Predicted Secondary structure																																																										.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.				260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
																								134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	D	E	W	Q	A	A	A	N	K	V	F	R	G	E	E	D	K	R	F	A	F	F	S	I	G	V	Q	G	A	.	.	D	M	K	T	L	A	Q	I	S	V	R	Q	P	L	P	L	Q	G	L	Q	F	R	E	L	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template Conservation
Template Sequence		L	G	G	I	F	M	P	S	D	G	H	C	H	L	D	S	N	G	L	Y	S	R	S	T	E	F	D	Y	P	S	V	G	Q	V	A	Q	A	L	S	A	A	N	I	Q	P	I	F	A	V	T	S	A	A	L	P	V	Y	Q	E	L	S	K	L	I	P	K	S	A	V	G	E	L	S	E	D	S	S	N	V	V
Template Known Secondary structure		G	G	T			B				S	S			B		T	T	S	B	B	G	G	G	G	G	B																T									S	T	T									T	T	S	T	T								T	T			T
Template Predicted Secondary structure
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	W	L	S	S	S	L	R	S	V	S	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	I	M	D	A	Y	N	S	L	S	S
Template Known Secondary structure												T	T
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions