Job Description P76396 Confidence 96.79% Date Thu Jan 5 12:22:36 GMT 2012 Rank 43 Aligned Residues 180 % Identity 16% Template c3eh2B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24c; PDBTitle: crystal structure of the human copii-coat protein sec24c Resolution 2.35 Å

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		8	.	10	.	.	.	.			.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure									.	.																			.																												.														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.																			.																												.														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	T	S	D	F	A	S	.	.	N	P	E	P	R	C	P	C	I	L	L	L	D	V	S	G	S	M	.	N	G	R	P	I	N	E	L	N	A	G	L	V	T	F	R	D	E	L	L	A	D	P	L	A	L	K	.	R	V	E	L	G	I	V	T	F	G	P	V	H	.	.	.	.	.	.	.	.	.	.	.
Query Conservation									.	.																			.																												.														.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.																			.																												.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	V	D	Y	C	K	N	N	K	F	P	S	P	P	A	F	I	F	M	I	D	V	S	Y	N	A	I	R	T	G	L	V	R	L	L	C	E	E	L	K	S	L	L	D	F	L	P	R	E	G	G	A	E	E	S	A	I	R	V	G	F	V	T	Y	N	K	V	L	H	F	Y	N	Q	M	M	V	V	S	D
Template Known Secondary structure				G	G	G	S	G	G	G															S					T	T	T													G	G	G					T	T		S	S											S	S	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
																73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.							.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	Q	P	F	T	S	A	A	N	F	F	P	P	I	L	.	.	.	.	.	.	F	A	Q	G	D	T	P	M	G	A	A	I	T	K	A	L	D	M	V	E	E	R	K	R	E	Y	R	A	N	G	I	S	Y	Y	R	P	W	I	F	L	I	T	D	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	D	M	F	V	P	L	L	D	G	F	L	V	N	V	N	E	S	R	A	V	I	T	S	L	L	D	Q	I	P	E	M	F	A	D	T	R	E	T	E	T	V	F	V	P	V	I	Q	A	G	M	E	A	L	K	A	A	E	C	A	G	K	.	.	.	.	.	.	.	.	.	.	L	F	L	F	H	T	S
Template Known Secondary structure			S	S							S	S	S	S	B		T	T	T	S																T	T								S															T					.	.	.	.	.	.	.	.	.	.							S
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.											.	.	.	.	.	.	.
		133	.		.	.	.	.																									.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure				.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.																			.	.	.	.	.
Query SS confidence				.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.																			.	.	.	.	.
Query Sequence		A	P	.	T	D	E	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	A	A	N	K	V	F	R	G	E	E	D	K	R	F	A	F	F	S	I	G	V	Q	.	.	G	A	D	M	K	T	L	A	Q	I	S	V	R	Q	P	L	P	L	.	.	.	.	.
Query Conservation				.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.																			.	.	.	.	.
Alig confidence				.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.																			.	.	.	.	.
Template Conservation
Template Sequence		L	P	I	A	E	A	P	G	K	L	K	N	R	D	D	R	K	L	I	N	T	D	K	E	K	T	L	F	Q	P	Q	T	G	A	Y	Q	T	L	A	K	E	C	V	A	Q	G	C	C	V	D	L	F	L	F	P	N	Q	Y	V	D	V	A	T	L	S	V	V	P	Q	L	T	G	G	S	V	Y	K	Y	A	S
Template Known Secondary structure					S	S	S	T	T								T	T	S	T	T	S	T	T	S					S		S	S	T													T										S	S								T						T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
				181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	Q	G	L	Q	F	R	E	L	F	S	W	L	S	S	S	L	R
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		F	Q	V	E	N	D	Q	E	R	F	L	S	D	L	R	R	D	V	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions