Job Description P76396 Confidence 97.60% Date Thu Jan 5 12:22:36 GMT 2012 Rank 38 Aligned Residues 174 % Identity 20% Template c3egxB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24a; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23a/24a complexed with the snare protein sec22b and3 bound to the transport signal sequence of the snare protein4 bet1 Resolution 3.30 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																														.																																											.	.	.	.	.	.	.	.	.
Query SS confidence																														.																																											.	.	.	.	.	.	.	.	.
Query Sequence		A	T	S	D	F	A	S	N	P	E	P	R	C	P	C	I	L	L	L	D	V	S	G	S	M	N	G	R	.	P	I	N	E	L	N	A	G	L	V	T	F	R	D	E	L	L	A	D	P	L	A	L	K	R	V	E	L	G	I	V	T	F	G	P	V	H	V	E	Q	P	F	.	.	.	.	.	.	.	.	.
Query Conservation																														.																																											.	.	.	.	.	.	.	.	.
Alig confidence																														.																							.	.	.	.																	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.
Template Sequence		A	P	S	E	Y	M	L	R	P	P	Q	P	P	V	Y	L	F	V	F	D	V	S	H	N	A	V	E	T	G	Y	L	N	S	V	C	Q	S	L	L	D	N	L	D	L	L	P	G	N	T	R	T	.	.	.	.	K	I	G	F	I	T	F	D	S	T	I	H	F	Y	G	L	Q	E	S	L	S	Q	P	Q	M
Template Known Secondary structure				G	G	G		S	S	S													S							T												T	S	T	T	S	S			S			.	.	.	.								S	S	S								T	T	S	S	S
Template Predicted Secondary structure																																																					.	.	.	.
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.					.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
																										78	.	80	.	.	.	.	.	.	.	.	.	90							.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	A	A	N	F	F	P	P	I	L	F	A	.	.	.	.	.	.	Q	G	D	T	P	M	G	A	A	I	T	K	A	L	D	M	V	E	E	R	K	R	E	Y	R	A	N	G	I	S	Y	Y	R	P	W	I	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	I	V	S	D	I	E	D	V	F	I	P	M	P	E	N	L	L	V	N	L	N	E	S	K	E	L	V	Q	D	L	L	K	T	L	P	Q	M	F	T	K	T	L	E	T	Q	S	A	L	G	P	A	L	Q	A	A	F	K	L	M	S	P	T	G	G	R	.	.	.	.	.	.	.	.	.	.	.	.	M	S
Template Known Secondary structure							T	T	S				S		S	S	S	S																		G	G	G	T	T	T	T																				T	T	T				.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.													.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140																					.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.																			.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.																			.	.	.	.	.
Query Sequence		L	I	T	D	G	A	P	T	D	E	W	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	N	K	V	F	R	G	E	E	D	K	R	F	A	F	F	S	I	G	V	Q	.	.	G	A	D	M	K	T	L	A	Q	I	S	V	R	Q	P	L	P	L	.	.	.	.	.
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.																			.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.																			.	.	.	.	.
Template Conservation
Template Sequence		V	F	Q	T	Q	L	P	T	L	G	V	G	A	L	K	P	R	E	E	P	N	H	R	S	S	A	K	M	T	P	S	T	D	F	Y	K	K	L	A	L	D	C	S	G	Q	Q	V	A	V	D	L	F	L	L	S	G	Q	Y	S	D	L	A	S	L	G	C	I	S	R	Y	S	A	G	S	V	Y	Y	Y	P	S
Template Known Secondary structure						S				S	S	T	T										S	S	S							S		S											T	T	T										S	S								T					T	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		636	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.
							181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	Q	G	L	Q	F	R	E	L	F	S	W	L	S	S	S	L	R
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.
Template Conservation
Template Sequence		Y	H	H	Q	H	N	P	V	Q	V	Q	K	L	Q	K	E	L	Q	R	Y	L	T
Template Known Secondary structure				T	T	T
Template Predicted Secondary structure
Template SS confidence
		719	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions