Job Description P76396 Confidence 95.00% Date Thu Jan 5 12:22:36 GMT 2012 Rank 45 Aligned Residues 174 % Identity 15% Template c3eg9B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:sec24 related gene family, member d; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin Resolution 3.00 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																					.																							.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.																							.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	N	P	E	P	R	C	P	C	I	L	L	L	D	V	S	G	S	M	.	N	G	R	P	I	N	E	L	N	A	G	L	V	T	F	R	D	E	L	L	A	D	.	P	L	A	L	K	R	V	E	L	G	I	V	T	F	G	P	V	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.																							.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																							.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	K	P	P	N	P	P	A	F	I	F	M	I	D	V	S	Y	S	N	I	K	N	G	L	V	K	L	I	C	E	E	L	K	T	M	L	E	K	I	P	K	E	E	Q	E	E	T	S	A	I	R	V	G	F	I	T	Y	N	K	V	L	H	F	F	N	V	K	S	N	L	A	Q	P	Q	M	M	V	V	T	D
Template Known Secondary structure		G	S														S						T	T													G	G	G					T	T	S	S	S											S	S	S								T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
																73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.							.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.																								.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.																								.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	Q	P	F	T	S	A	A	N	F	F	P	P	I	L	.	.	.	.	.	.	F	A	Q	G	D	T	P	M	G	A	A	I	T	K	A	L	D	M	V	E	E	R	K	.	.	R	E	Y	R	A	N	G	I	S	Y	Y	R	P	W	I	F	L	I	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.																								.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.																								.	.			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	G	E	V	F	V	P	L	L	D	G	F	L	V	N	Y	Q	E	S	Q	S	V	I	H	N	L	L	D	Q	I	P	D	M	F	A	D	S	N	E	N	E	T	V	F	A	P	V	I	Q	A	G	M	E	A	L	K	A	A	D	C	P	G	K	.	.	.	.	.	.	.	.	.	.	.	.	L	F	I	F	H
Template Known Secondary structure		T	T	S						S	S	S	S	S	B		T	T	T	T															T	T	T																							T	S				.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		515	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.													.	.	580	.	.
		131	.	.	.	.	.		.	.	.	140	.																									.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.				.	.	.	.	.	.	180
Predicted Secondary structure								.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.												.	.	.
Query SS confidence								.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.												.	.	.
Query Sequence		D	G	A	P	T	D	.	E	W	Q	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	K	V	F	R	G	E	E	D	K	R	F	A	F	F	S	I	G	V	Q	.	.	G	A	D	M	K	T	L	A	Q	I	S	.	.	.	V	R	Q	P	L	P	L
Query Conservation								.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.												.	.	.
Alig confidence								.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.												.	.	.
Template Conservation
Template Sequence		S	S	L	P	T	A	E	A	P	G	K	L	K	N	R	D	D	K	K	L	V	N	T	D	K	E	K	I	L	F	Q	P	Q	T	N	V	Y	D	S	L	A	K	D	C	V	A	H	G	C	S	V	T	L	F	L	F	P	S	Q	Y	V	D	V	A	S	L	G	L	V	P	Q	L	T	G	G	T	L	Y	K	Y
Template Known Secondary structure			S				S	S	S	T	T											S	S		S		G	G	G	G	G	S		S	S	S												T	T										S	S								T						T	T
Template Predicted Secondary structure
Template SS confidence
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	L	Q	F	R	E	L	F	S	W	L	S	S	S	L	R	S	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	N	F	Q	M	H	L	D	R	Q	Q	F	L	N	D	L	R	N	D
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		663	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions