Job Description P76396 Confidence 99.70% Date Thu Jan 5 12:22:36 GMT 2012 Rank 19 Aligned Residues 168 % Identity 15% Template c2b2xB_ PDB info PDB header:immune system Chain: B: PDB Molecule:integrin alpha-1; PDBTitle: vla1 rdeltah i-domain complexed with a quadruple mutant of the aqc22 fab Resolution 2.20 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	P	C	I	L	L	L	D	V	S	G	S	M	N	G	R	P	I	N	E	L	N	A	G	L	V	T	F	R	D	E	L	L	A	D	P	L	A	L	K	R	V	E	L	G	I	V	T	F	G	P	V	H	V	E	Q	P	F	T	S	A	A	N	F	F	P	P	I	L	F	A	Q	G	D	T	P	M	G	A	A
Query Conservation
Alig confidence																.	.
Template Conservation																.	.
Template Sequence		L	D	I	V	I	V	L	D	G	S	N	S	I	Y	.	.	P	W	E	S	V	I	A	F	L	N	D	L	L	K	R	G	P	K	Q	T	Q	V	G	I	V	Q	Y	G	E	N	V	T	H	E	F	N	L	N	K	Y	S	E	E	V	L	V	A	A	N	K	I	V	Q	R	G	G	R	Q	T	M	T	A	L	G
Template Known Secondary structure											S	T	T			.	.													T	T			T	T	S									S	S	S							T	T	S										T	T							S	S
Template Predicted Secondary structure																.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.						.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.
Query Sequence		I	T	K	A	L	D	M	V	E	E	R	K	R	E	Y	R	A	N	G	I	S	Y	Y	R	P	W	I	F	L	I	T	D	G	A	P	T	D	E	W	Q	A	A	A	N	K	V	F	R	G	E	E	D	K	R	F	A	F	F	S	I	G	V	Q	.	.	.	.	.	G	A	D	M	K	T	L	A	Q	I	S	V
Query Conservation																																																																	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.																											.	.																						.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.																											.	.
Template Sequence		I	D	T	A	R	K	.	.	.	.	.	.	.	.	E	A	F	T	E	A	R	G	A	R	K	V	M	V	I	V	T	D	G	E	S	H	D	N	Y	R	.	.	L	K	Q	V	I	Q	D	C	E	D	E	N	I	Q	R	F	S	I	A	I	L	G	H	Y	S	T	E	K	F	V	E	E	I	K	S	I	A	S
Template Known Secondary structure							T	.	.	.	.	.	.	.	.	T	T	S	S	G	G	G	T										S	S			T	T	G	G	G	.	.											T	T										T	T												T	T	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.																											.	.
Template SS confidence
		230	.	.	.	.	.									.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		175	.	.	.			.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		R	Q	P	L	.	.	P	L	Q	G	L	Q	F	R	E	L	F	S	W	L	S	S	S	L	R	S	V
Query Conservation						.	.
Alig confidence						.	.
Template Conservation
Template Sequence		E	P	T	E	K	H	F	F	N	V	S	D	E	L	A	L	V	T	I	V	K	A	L	G	E	R	I
Template Known Secondary structure		S	S	T	T	S	S					S	S	G	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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