Job Description P76396 Confidence 97.42% Date Thu Jan 5 12:22:36 GMT 2012 Rank 40 Aligned Residues 142 % Identity 14% Template c1yvrA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:60-kda ss-a/ro ribonucleoprotein; PDBTitle: ro autoantigen Resolution 1.95 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.				.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																													.	.	.
Query SS confidence																													.	.	.
Query Sequence		T	S	D	F	A	S	N	P	E	P	R	C	P	C	I	L	L	L	D	V	S	G	S	M	N	G	R	.	.	.	P	I	N	E	L	N	A	G	L	V	T	F	R	D	E	L	L	A	D	P	L	A	L	K	R	V	E	L	G	I	V	T	F	G	P	V	H	V	E	Q	P	F	T	S	A	A	N	F	F	P
Query Conservation																													.	.	.
Alig confidence																													.	.	.
Template Conservation
Template Sequence		Y	K	S	F	K	L	V	E	P	T	G	K	R	F	L	L	A	I	D	V	S	A	S	M	N	Q	R	V	L	G	S	I	L	N	A	S	V	V	A	A	A	M	C	M	L	V	A	R	T	E	K	D	S	H	M	V	A	F	S	D	E	M	L	P	C	P	I	T	V	N	M	L	L	H	E	V	V	E	K	M
Template Known Secondary structure				T	S																	S	G	G	G	G	S	B	S	T	T	S	S		B																	S	S							S	S	S					S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		P	I	L	F	A	Q	G	D	T	P	M	G	A	A	I	T	K	A	L	D	M	V	E	E	R	K	R	E	Y	R	A	N	G	I	S	Y	Y	R	P	W	I	F	L	I	T	D	G	A	P	T	D	E	W	Q	A	A	A	N	K	V	F	R	.	.	G	E	E	D	K	R	F	A	F	F	S	I	G	V	Q	G
Query Conservation																																																																.	.
Alig confidence						.																.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Conservation						.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	D	I	T	.	M	G	S	T	D	C	A	L	P	M	L	W	A	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	T	A	A	D	I	F	I	V	F	T	D	C	E	T	N	V	E	D	V	H	P	A	T	A	L	K	Q	Y	R	E	K	M	G	I	P	A	K	L	I	V	C	A	M	T	S
Template Known Secondary structure		T	T			.		S				T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	T	T				S												S	S	S															T											S	S
Template Predicted Secondary structure						.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		438	.	440	.		.	.	.	.	.	.	.	.	450	.	.	.	.	.	.														.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
		164
Predicted Secondary structure
Query SS confidence
Query Sequence		A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		504

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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