Job Description P76396 Confidence 99.04% Date Thu Jan 5 12:22:36 GMT 2012 Rank 33 Aligned Residues 189 % Identity 9% Template c1u8cB_ PDB info PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: a novel adaptation of the integrin psi domain revealed from its2 crystal structure Resolution 3.10 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	A	S	N	P	E	P	R	C	P	C	I	L	L	L	D	V	S	G	S	M	N	G	R	P	I	N	E	L	N	A	G	L	V	T	F	R	D	E	L	L	A	D	P	L	A	L	K	R	V	E	L	G	I	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.
Template Sequence		V	R	Q	V	E	D	Y	P	V	D	I	Y	Y	L	M	D	L	S	Y	S	M	K	D	D	.	L	W	S	I	Q	N	L	G	T	K	L	A	T	Q	M	R	K	L	T	S	N	L	R	I	G	F	G	A	F	V	D	K	P	V	S	P	Y	M	Y	I	S	P	P	E	A	L	E	N	P	C	Y	D	M	K	T
Template Known Secondary structure						S	S												B	G	G	G	T	T	T	.	T	S	T	T	T	S	T	T	T								T	T		S														S	T	T	T	T	T		S	S	S	G	G	G	S	S	S		T	T	T	S	S
Template Predicted Secondary structure																										.
Template SS confidence
		1104	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.		.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.
									68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																																																					.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																																																					.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	F	G	P	V	H	V	E	Q	P	F	T	S	A	A	N	F	F	P	P	I	L	F	A	Q	G	D	T	P	M	G	A	A	I	T	K	A	L	D	M	V	E	E	R	K	R	E	Y	R	A	N	G	I	S	Y	Y	R	P	W	I	F	L	I	T	D	G	A	P	T	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.																																																																					.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																																		.	.																		.	.	.	.	.
Template Conservation																																																										.	.
Template Sequence		T	C	L	P	M	F	G	Y	K	H	V	L	T	L	T	D	Q	V	T	R	F	N	E	E	V	K	K	Q	S	V	S	R	N	R	D	A	P	E	G	G	F	D	A	I	M	Q	A	T	V	C	D	E	K	I	G	W	.	.	R	N	D	A	S	H	L	L	V	F	T	T	D	A	K	T	H	I	A	L	D	G
Template Known Secondary structure								S							S	B	S		T	T	T	T					T	T				B			S	S	S	S	B													T	T	T	T			.	.		T	T	S									S	S		B			T	T	G	G
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		1183	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.			.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260
																												136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	W	Q	A	A	A	N	K	V	F	R	G	E	E	D	K	R	F	A	F	F	S	I	G	V	Q	G	A	D	.	M	K	T	L	A	Q	I	S	V	R	Q	P	L	P	L	Q	G	L	Q	F	R	E	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Template Conservation
Template Sequence		R	L	A	G	I	V	Q	P	N	D	G	Q	C	H	V	G	S	D	N	H	Y	S	A	S	T	T	M	D	Y	P	S	L	G	L	M	T	E	K	L	S	Q	K	N	I	N	L	I	F	A	V	T	E	N	V	V	N	L	Y	Q	N	Y	S	E	L	I	P	G	T	T	V	G	V	L	S	M	D	S	S	N	V
Template Known Secondary structure		G	T	T	T			S										T	T		B		T	T	T	T	T	S															T	T																				T	T	S	T	T								T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		1261	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	W	L	S	S	S	L	R	S	V	S	R	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	L	I	V	D	A	Y	G	K	I	R	S	K	V
Template Known Secondary structure														T
Template Predicted Secondary structure
Template SS confidence
		1341	.	.	.	.	.	.	.	.	1350	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions