Job Description P76396 Confidence 98.04% Date Thu Jan 5 12:22:36 GMT 2012 Rank 36 Aligned Residues 198 % Identity 13% Template c1pd0A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the copii coat subunit, sec24,2 complexed with a peptide from the snare protein sed53 (yeast syntaxin-5) Resolution 2.60 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																										.																																													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.																																													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	A	T	S	D	F	A	S	N	P	E	P	R	C	P	C	I	L	L	L	D	V	S	G	.	S	M	N	G	R	P	I	N	E	L	N	A	G	L	V	T	F	R	D	E	L	L	A	D	P	L	A	L	K	R	V	E	L	G	I	V	T	F	G	P	V	H	V	E	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																										.																																													.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.																																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	A	P	K	E	Y	T	L	R	Q	P	P	P	A	T	Y	C	F	L	I	D	V	S	Q	S	S	I	K	S	G	L	L	A	T	T	I	N	T	L	L	Q	N	L	D	S	I	P	N	H	D	E	R	T	R	I	S	I	L	C	V	D	N	A	I	H	Y	F	K	I	P	L	D	S	E	N	I	N	M	M	D
Template Known Secondary structure					G	G	G		S	S						B								S							T											T	T	T	T	T	S			T	T	S										S	S	S									G	G	G
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
																75	.	.	.	.	80	.	.	.	.	.	.	.	.							.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	P	F	T	S	A	A	N	F	F	P	P	I	L	.	.	.	.	.	.	F	A	Q	G	D	T	P	M	G	A	A	I	T	K	A	L	D	M	V	E	E	R	K	R	E	Y	R	A	N	G	I	S	Y	Y	R	P	W	I	F	L	I	T	D	G	A	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	D	L	E	E	P	N	S	M	V	V	S	L	K	A	C	R	Q	N	I	E	T	L	L	T	K	I	P	Q	I	F	Q	S	N	L	I	T	N	F	A	L	G	P	A	L	K	S	A	Y	H	L	I	G	G	V	G	G	K	.	.	.	.	.	.	.	.	.	.	.	.	I	I	V	V	S	G	T	L	P
Template Known Secondary structure					T	T			T	T	T	S			T	T	T	T															T	T	T																				T	T	T				.	.	.	.	.	.	.	.	.	.	.	.						S	S
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.													.	.	.	440	.	.	.	.	.
		135	.	.	.						.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.							180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure						.	.	.	.	.																									.	.																		.	.	.	.	.	.
Query SS confidence						.	.	.	.	.																									.	.																		.	.	.	.	.	.
Query Sequence		T	D	E	W	.	.	.	.	.	Q	A	A	A	N	K	V	F	R	G	E	E	D	K	R	F	A	F	F	S	I	G	V	Q	.	.	G	A	D	M	K	T	L	A	Q	I	S	V	R	Q	P	L	P	.	.	.	.	.	.	L	Q	G	L	Q	F	R	E	L	F	S	W	L	S	S	S	L	R	S	V	S	R
Query Conservation						.	.	.	.	.																									.	.																		.	.	.	.	.	.
Alig confidence						.	.	.	.	.																									.	.																		.	.	.	.	.	.
Template Conservation
Template Sequence		N	L	G	I	G	K	L	Q	R	D	S	F	Y	K	N	F	T	I	D	C	S	K	V	Q	I	T	V	D	L	F	L	A	S	E	D	Y	M	D	V	A	S	L	S	N	L	S	R	F	T	A	G	Q	T	H	F	Y	P	G	F	S	G	K	N	P	N	D	I	V	K	F	S	T	E	F	A	K	H	I	S	M
Template Known Secondary structure			S	S	T	T																T	T	T	T										S	S													T	T	T								T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
		202	.		.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		S	T	.	P	G	T	E	V	V	L	E	A	P	K	G	W
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		D	F	C	M	E	T	V	M	R	A	R	G	S	T	G	L
Template Known Secondary structure															T	T
Template Predicted Secondary structure
Template SS confidence
		551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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