Job Description P76396 Confidence 97.69% Date Thu Jan 5 12:22:36 GMT 2012 Rank 37 Aligned Residues 197 % Identity 12% Template c1m2vB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the yeast sec23/24 heterodimer Resolution 2.75 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																														.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	T	S	D	F	A	S	N	P	E	P	R	C	P	C	I	L	L	L	D	V	S	G	S	M	N	G	R	.	P	I	N	E	L	N	A	G	L	V	T	F	R	D	E	L	L	A	D	P	L	A	L	K	R	V	E	L	G	I	V	T	F	G	P	V	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																														.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	P	K	E	Y	T	L	R	Q	P	P	P	A	T	Y	C	F	L	I	D	V	S	Q	S	S	I	K	S	G	L	L	A	T	T	I	N	T	L	L	Q	N	L	D	S	I	P	N	H	D	E	R	T	R	I	S	I	L	C	V	D	N	A	I	H	Y	F	K	I	P	L	D	Q	I	N	M	M	D	I	A	D
Template Known Secondary structure				G	G	G		S	S						B								S						S													T	T	T	T	S			T	T	S										S	S	S
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
																73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.							.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	Q	P	F	T	S	A	A	N	F	F	P	P	I	L	.	.	.	.	.	.	F	A	Q	G	D	T	P	M	G	A	A	I	T	K	A	L	D	M	V	E	E	R	K	R	E	Y	R	A	N	G	I	S	Y	Y	R	P	W	I	F	L	I	T	D	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	E	P	F	L	P	R	P	N	S	M	V	V	S	L	K	A	C	R	Q	N	I	E	T	L	L	T	K	I	P	Q	I	F	Q	S	N	L	I	T	N	F	A	L	G	P	A	L	K	S	A	Y	H	L	I	G	G	V	G	G	K	.	.	.	.	.	.	.	.	.	.	.	.	I	I	V	V	S	G	T
Template Known Secondary structure			S	S				S		S	S	S	S	S			T	T	T	T															T	S	S																				T	T	T				.	.	.	.	.	.	.	.	.	.	.	.						S	S
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.													.	.	.	.	.	.	.
		133	.	.	.	.	.																						.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.							180	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.																		.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.																		.	.	.	.	.	.
Query Sequence		A	P	T	D	E	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	A	A	N	K	V	F	R	G	E	E	D	K	R	F	A	F	F	S	I	G	V	Q	.	.	G	A	D	M	K	T	L	A	Q	I	S	V	R	Q	P	L	P	.	.	.	.	.	.	L	Q	G	L
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.																		.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.																		.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	N	L	G	I	G	K	L	Q	R	R	N	E	N	T	S	K	E	T	A	Q	L	L	S	C	Q	D	S	F	Y	K	N	F	T	I	D	C	S	K	V	Q	I	T	V	D	L	F	L	A	S	E	D	Y	M	D	V	A	S	L	S	N	L	S	R	F	T	A	G	Q	T	H	F	Y	P	G	F	S	G	K
Template Known Secondary structure					S	S	T	T										T	T						T	S		S	S	T													T										S	S													T	T	T								S			T	T
Template Predicted Secondary structure
Template SS confidence
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		Q	F	R	E	L	F	S	W	L	S	S	S	L	R	S	V	S	R	S	T	.	P	G	T	E	V	V	L	E	A	P	K	G	W
Query Conservation																						.
Alig confidence																						.
Template Conservation
Template Sequence		N	P	N	D	I	V	K	F	S	T	E	F	A	K	H	I	S	M	D	F	C	M	E	T	V	M	R	A	R	G	S	T	G	L
Template Known Secondary structure		S																	S														T	T
Template Predicted Secondary structure
Template SS confidence
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions