Job Description P76396 Confidence 96.62% Date Thu Jan 5 12:22:36 GMT 2012 Rank 44 Aligned Residues 157 % Identity 16% Template c1m2oA_ PDB info PDB header:protein transport/signaling protein Chain: A: PDB Molecule:protein transport protein sec23; PDBTitle: crystal structure of the sec23-sar1 complex Resolution 2.50 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	N	P	E	P	R	C	P	C	I	L	L	L	D	V	S	G	S	M	N	G	R	P	I	N	E	L	N	A	G	L	V	T	F	R	D	E	L	L	A	D	P	L	A	L	K	R	V	E	L	G	I	V	T	F	G	P	V	H	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.
Template Sequence		K	P	V	T	V	P	P	I	F	F	F	V	V	D	L	.	.	T	S	E	T	E	N	L	D	S	L	K	E	S	I	I	T	S	L	S	L	L	P	P	N	A	L	I	G	L	I	T	Y	G	N	V	V	Q	L	H	D	L	S	S	E	T	I	D	R	C	N	V	F	R	G	D	R	E	Y	Q	L	E	A	L
Template Known Secondary structure						S											.	.		S																		T	S		T	T									S	S								S	S	S	S	S								T	T	S
Template Predicted Secondary structure																	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
																									75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.										.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	P	F	T	S	A	A	N	F	F	P	P	I	L	F	A	Q	G	D	T	.	.	.	.	.	.	.	.	.	P	M	G	A	A	I	T	K	A	L	D	M	V	E	E	R	K	R	E	Y	R	A	N	G	I	S	Y	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		T	E	M	L	T	G	Q	K	P	T	V	T	P	F	S	L	N	R	F	F	L	P	L	E	Q	V	E	F	K	L	N	Q	L	L	E	N	L	S	P	D	Q	W	S	V	P	A	G	H	R	P	L	R	A	T	G	S	A	L	N	I	A	S	L	L	L	Q	G	C	Y	K	N	I	P	A	R	.	.	.	.	.
Template Known Secondary structure							S							S	S	S	G	G	G	G	S																T				S		S				T	T	B																						T	T	S				.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.																														.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Query Sequence		R	P	W	I	F	L	I	T	D	G	A	P	T	D	E	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	A	A	N	K	V	F	R	G	E	E	D	K	R	F	A	F	F	S	I	G	V	Q	.	.	G	A	D	M	K	T	L	A	Q
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Alig confidence		.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	I	I	L	F	A	S	G	P	G	T	V	A	P	G	L	I	V	N	S	E	L	K	D	P	L	R	S	H	H	D	I	D	S	D	H	A	Q	H	Y	K	K	A	C	K	F	Y	N	Q	I	A	Q	R	V	A	A	N	G	H	T	V	D	I	F	A	G	C	Y	D	Q	I	G	M	S	E	M	K	Q
Template Known Secondary structure		.	.	.						S	S				S	S	S	S			S		S	B	T	T	S											T			T	T																			T										S	S			S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		172	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	V	R	Q	P	L	P	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	D	S	T	G	G	V	L
Template Known Secondary structure							T
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions