Job Description P76396 Confidence 99.07% Date Thu Jan 5 12:22:36 GMT 2012 Rank 32 Aligned Residues 135 % Identity 12% Template c1jeyB_ PDB info PDB header:dna binding protein/dna Chain: B: PDB Molecule:ku80; PDBTitle: crystal structure of the ku heterodimer bound to dna Resolution 2.50 Å

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		22	.	.	.	.	.	.	.	30	.	.							.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.																	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	I	L	L	L	D	V	S	G	S	M	.	.	.	.	.	.	N	G	R	P	I	N	E	L	N	A	G	L	V	T	F	R	D	E	L	L	A	D	P	L	A	L	K	R	V	E	L	G	I	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	P	V	H	V	E	Q	P	F	T	S
Query Conservation													.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	L	C	M	D	V	G	F	T	M	S	N	S	I	P	G	I	E	S	P	F	E	Q	A	K	K	V	I	T	M	F	V	Q	R	Q	V	F	A	E	N	K	D	E	I	A	L	V	L	F	G	T	D	G	T	D	N	P	L	S	G	G	D	Q	Y	Q	N	I	T	V	H	R	H	L	M	L	P	D	F	D
Template Known Secondary structure										G	G	G	G			B	T	T	B																					T	T											S		S	S		B	S	T	T		T	T	T		S	T	T
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		A	A	N	F	F	P	P	I	L	F	A	Q	.	G	D	T	P	M	G	A	A	I	T	K	A	L	D	M	V	E	E	R	K	R	E	Y	R	A	N	G	I	S	Y	Y	R	P	W	I	F	L	I	T	D	G	A	P	T	D	E	W	Q	A	A	A	N	K	V	F	R	G	E	E	D	K	R	F	A	F	F	S
Query Conservation														.
Alig confidence														.																							.	.	.	.	.																				.
Template Conservation																																					.	.	.	.	.																				.
Template Sequence		L	L	E	D	I	E	S	K	I	Q	P	G	S	Q	Q	A	D	F	L	D	A	L	I	V	S	M	D	V	I	Q	H	E	T	I	G	.	.	.	.	.	K	K	F	E	K	R	H	I	E	I	F	T	D	L	S	S	R	F	S	.	K	S	Q	L	D	I	I	I	H	S	L	K	K	C	D	I	S	L	Q	F
Template Known Secondary structure								T	T					S	S																			S	S	S	.	.	.	.	.	S			S												S				.		T	T											T	T
Template Predicted Secondary structure																																					.	.	.	.	.																				.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.						.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		159	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	V	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	P	F
Template Known Secondary structure				S	S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions