Job Description P0A9D8 Confidence 99.96% Date Thu Jan 5 11:09:57 GMT 2012 Rank 6 Aligned Residues 234 % Identity 13% Template c3pmoA_ PDB info PDB header:transferase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase; PDBTitle: the structure of lpxd from pseudomonas aeruginosa at 1.3 a resolution Resolution 1.30 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Q	V	I	A	L	L	D	S	G	A	L	R	V	A	E	K	I	D	G	Q	W	V	T	H	Q	W	L	K	K	A	V	L	L	S	F	R	I	N	D	N	Q	V	I	E	G	A	E	S	R	Y	F	D	K	V	P	M	K	F	A	D	Y	D	E	A	R	F	Q	K	E	G	F	R	V	V	P	P	A	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	D	A	D	G	F	A	G	T	A	L	V	V	A	N	P	Y	L	A	Y	A	S	L	S	H	L	F	D	R	K	P	K	A	A	A	G	I	H	P	T	A	I	V	A	A	D	A	E	V	D	P	S	A	S	V	G	A	Y	A	V	I	E	S	G	A	R	I	G	A	G	V	S	I	G	A	H	C	V	I
Template Known Secondary structure						T	T		S	S						S											G	G	G								S				T	T					T	T					T	T					T	T					T	T					T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.																				.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	Q	G	A	F	I	A	R	N	T	V	L	M	P	.	S	Y	V	N	I	G	A	Y	V	D	E	G	T	M	V	D	T	W	A	T	V	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	A	Q	I	G	K	N	V	H	L	S	G	G	V	G	I	G	G	V	L	E	P	L
Query Conservation																.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	R	S	V	I	G	E	G	G	W	L	A	P	R	V	T	L	Y	H	D	V	T	I	G	A	R	V	S	I	Q	S	G	A	V	I	G	G	E	G	F	G	F	A	N	E	K	G	V	W	Q	K	I	A	Q	I	G	G	V	T	I	G	D	D	V	E	I	G	A	N	T	T	I	D	R	G	A	L	S	D
Template Known Secondary structure			T	T					T	T					T	T					T	T					T	T					T	T														T	T															S	S					T	T							S	S	S
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		172															.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	P	T	I	I	E	D	N	C	F	I	G	A	R	S	E	V	V	E	G	V	I	V	E	E	G	S	V	I	S	M	G	V	Y	I	G	Q	S	T	R	I	Y	D	R	E	T	G	E	I	H	Y	G	R	V	P	A	G	S	V	V	V	S	G	N
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.								.
Template Conservation																																																																.	.	.	.	.	.	.								.
Template Sequence		T	L	I	G	N	G	V	K	L	D	N	Q	I	M	I	A	H	N	V	Q	I	G	D	H	T	A	M	A	A	C	V	G	I	S	G	S	A	K	I	G	R	H	C	M	L	A	G	G	V	G	L	V	G	H	I	E	I	C	D	N	V	F	.	.	.	.	.	.	.	V	T	G	M	T	M	V	.	T	R	S
Template Known Secondary structure						T	T					T	T					T	T					T	T					T	T					T	T					S	S					T	T					S	S					S	S			.	.	.	.	.	.	.			T	T				.		S
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.								.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.								.	.	290	.	.	.	.		.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	S	K	D	G	K	Y	S	L	Y	C	A	V	I	V	K	K	V	D	A	K	T	R	G	K	V	G	I	N	E	L	L	R	T	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	E	P	G	S	Y	S	S	G	T	A	M	Q	P	A	A	E	W	K	K	S	A	A	R	I	R	Q	L	D	D	M	A	R	R	L
Template Known Secondary structure		B		S							S																		T
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions