Job Description P0A9D8 Confidence 99.97% Date Thu Jan 5 11:09:57 GMT 2012 Rank 3 Aligned Residues 238 % Identity 13% Template c2iu9C_ PDB info PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine PDBTitle: chlamydia trachomatis lpxd with 100mm udpglcnac (complex ii) Resolution 3.1 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		F	E	R	R	A	E	I	T	P	A	N	A	D	T	V	T	R	E	A	V	N	Q	V	I	A	L	L	D	S	G	A	L	R	V	A	E	K	I	D	G	Q	W	V	T	H	Q	W	L	.	K	K	A	V	L	L	S	F	R	I	N	D	N	Q	V	I	E	G	A	E	S	R	Y	F	D	K	V	P	M	K	F
Query Conservation																																																		.
Alig confidence																																																		.
Template Conservation
Template Sequence		Y	A	K	H	L	K	S	S	E	A	G	A	I	I	I	S	R	T	Q	F	Q	K	Y	R	D	L	N	K	N	F	L	I	T	S	E	S	P	S	L	V	F	Q	K	C	L	E	L	F	I	T	P	V	D	S	G	F	P	G	I	H	P	T	A	V	I	H	P	T	A	I	I	E	D	H	V	C	I	E	P	Y
Template Known Secondary structure		T	G	G	G	T	S	S				S													T	T	S	S	S						S	S											T	T	T							S			S	B		T	T					T	T					T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																					.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	Y	D	E	A	R	F	Q	K	E	G	F	R	V	V	P	P	A	A	V	R	Q	G	A	F	I	A	R	N	T	V	L	M	P	.	S	Y	V	N	I	G	A	Y	V	D	E	G	T	M	V	D	T	W	A	T	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																					.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	V	C	Q	H	A	H	V	G	S	A	C	H	I	G	S	G	S	V	I	G	A	Y	S	T	V	G	E	H	S	Y	I	H	P	R	V	V	I	R	E	R	V	S	I	G	K	R	V	I	I	Q	P	G	A	V	I	G	S	C	G	F	G	Y	V	T	S	A	F	G	Q	H	K	H	L	K	H	L	G	K
Template Known Secondary structure						T	T					T	T					T	T					T	T					T	T					S	S					S	S					T	T					T	T								S						S	S	S
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
																																								148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	C	A	Q	I	G	K	N	V	H	L	S	G	G	V	G	I	G	G	V	L	E	P	L	Q	A	N	P	T	I	I	E	D	N	C	F	I	G	A	R	S	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.
Template Sequence		V	I	I	E	D	D	V	E	I	G	A	N	T	T	I	D	R	G	R	F	K	H	S	V	V	R	E	G	S	K	I	D	N	L	V	Q	I	A	H	Q	V	E	V	G	Q	H	S	M	I	V	A	Q	A	G	I	A	G	.	.	.	.	.	.	.	.	S	T	K	I	G	N	H	V	I	I	G	G	Q	A	G
Template Known Secondary structure						T	T					T	T							S	S	S						T	T					T	T					T	T					T	T					T	T					T	.	.	.	.	.	.	.	.	T					T	T					T	T
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.									.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	E	G	V	I	V	E	E	G	S	V	I	S	M	G	V	Y	I	G	Q	S	T	R	I	Y	D	R	E	T	G	E	I	H	Y	G	R	V	P	A	G	S	V	V	V	S	G	N	L	P	S	K	D	G	K	Y	S	L	Y	C	A	V	I	V	K	K	V	D	A	K	T	R	G	K	V	G	I	N	E	L
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Sequence		I	T	G	H	I	C	I	A	D	H	V	I	M	M	A	Q	T	G	V	T	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	S	P	G	I	Y	G	G	.	.	A	P	A	R	P	Y	Q	E	I	H	R	Q	V	A	K	V	R	N	L	P	R	L	E	E	R	I	A	A	L	E	K	L
Template Known Secondary structure				S	S					T	T					T	T					S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B		S						T	.	.	T	T	T														T	T												T	T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.																.	.	.	.	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	T	I	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Q	K	L	E
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		344	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions