Job Description P20083 Confidence 100.00% Date Thu Jan 5 11:37:45 GMT 2012 Rank 14 Aligned Residues 188 % Identity 55% Template c3nuhB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit b; PDBTitle: a domain insertion in e. coli gyrb adopts a novel fold that plays a2 critical role in gyrase function Resolution 3.10 Å

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		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	P	G	K	L	A	D	C	T	A	Q	D	L	N	R	T	E	L	F	L	V	E	G	D	S	A	G	G	S	A	K	Q	A	R	D	R	E	Y	Q	A	I	M	P	L	K	G	K	I	L	N	T	W	E	V	S	S	D	E	V	L	A	S	Q	E	V	H	D	I	S	V	A	I	G	I	D	P	D	S	D
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Sequence		G	L	P	G	K	L	A	D	C	Q	E	R	D	P	A	L	S	E	L	Y	L	V	E	G	D	S	A	G	G	S	A	K	Q	G	R	N	R	K	N	Q	A	I	L	P	L	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	S	Q	E	V	A	T	L	I	T	A	L	G	.	.	.	.	.	.
Template Known Secondary structure				B	T	T	B	B			S			S	T	T	S																			S		T	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.														.	450	.	.	.	.	.	.	.	.	.	460	.	.
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		D	L	S	Q	L	R	Y	G	K	I	C	I	L	A	D	A	D	S	D	G	L	H	I	A	T	L	L	C	A	L	F	V	K	H	F	R	A	L	V	K	H	G	H	V	Y	V	A	L	P	P	L	Y	R	I	D	L	G	K	E	V	Y	Y	A	L	T	E	E	E	K	E	G	V	L	E	Q	L	K	R	.	.
Query Conservation																																																																																.	.
Alig confidence		.	.	.	.	.																																																																										.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	R	Y	H	S	I	I	I	X	T	D	A	D	V	D	G	S	H	I	R	T	L	L	L	T	F	F	Y	R	Q	X	P	E	I	V	E	R	G	H	V	Y	I	A	Q	P	P	L	Y	K	V	K	K	G	K	Q	E	Q	Y	I	K	D	D	E	A	X	D	Q	Y	Q	I	S	I	A	L	D	G
Template Known Secondary structure		.	.	.	.	.			S								S	S	T	T	T	T																				T	T									S						T	T																					T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							489	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	L	H	T	N	A	S	A	P	A	L	A	G	E	A	L	E	K	L	V	S	E	Y	N	A	T	Q	K	X	I	N	R	X	E	R	R	Y	P	K	A	X	L	K	E	L	I	Y	Q	P	T	L	T	E	A	D	L	S	D	E	Q	T	V	T	R	W	V	N	A	L	V	S	E	L	N	D	K	E	Q	H
Template Known Secondary structure							S	S	S		S																								T	T	T	T	S											S																															S
Template Predicted Secondary structure
Template SS confidence
		564	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	S	Q	W	K	F	D	V	H	T	N	A	L	F	E	P	I	V	R	V	R	T	H	G	V	D	T	D	Y	P	L	D	H	E	F	I	T	G	G	E	Y	R	R	I	C	T	L	G	E	K	L	R	G	L	L	E	E	D	A	F	I	E	R	G	E	R	R	Q	P	V	A	S	F	E	Q	A	L	D	W	L
Template Known Secondary structure		S																						S	S	S													S																T	T	T	T	S						S	S						S	S
Template Predicted Secondary structure
Template SS confidence
		644	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.
					554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	K	K	G	K	P	N	V	Q	R	F	K	G	L	G	E	M	N	P	M	Q	L	R	E	T	T	L	D	P	N	T	R	R	L	V	Q	L	T	I	D	D	E	D	D	Q	R	T	D	A	M	M	D	M	L	L	A	K
Query Conservation		.	.	.
Alig confidence		.	.	.																																							.	.
Template Conservation																																											.	.
Template Sequence		V	K	E	S	R	R	G	L	S	I	Q	R	Y	K	G	L	G	E	X	N	P	E	Q	L	W	E	T	T	X	D	P	E	S	R	R	X	L	R	V	T	V	.	.	K	D	A	I	A	A	D	Q	L	F	T	T	L	X	G	D
Template Known Secondary structure						T	T	T							S		G	G	G	S										T		T	T	T									.	.															S
Template Predicted Secondary structure																																											.	.
Template SS confidence
		727	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.			.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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