Job Description P20083 Confidence 99.58% Date Thu Jan 5 11:37:45 GMT 2012 Rank 33 Aligned Residues 172 % Identity 19% Template c3na3A_ PDB info PDB header:protein binding Chain: A: PDB Molecule:dna mismatch repair protein mlh1; PDBTitle: mutl protein homolog 1 isoform 1 from homo sapiens Resolution 2.50 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		A	D	A	I	E	V	L	T	G	L	E	P	V	R	R	R	P	G	M	Y	T	D	T	T	R	P	N	H	L	G	Q	E	V	I	D	N	S	V	D	E	A	L	A	G	H	A	K	R	V	D	V	I	L	H	A	D	Q	.	.	S	L	E	V	I	D	D	G	R	G	M	P	V	D	I	H	P	E	E	G	V
Query Conservation																																																											.	.
Alig confidence																									.	.															.	.	.			.													.	.																.	.	.	.	.	.
Template Conservation																									.	.															.	.	.			.																														.	.	.	.	.	.
Template Sequence		A	G	V	I	R	R	L	D	E	T	V	V	N	R	I	A	A	G	E	V	I	Q	R	.	.	P	A	N	A	I	K	E	M	I	E	N	C	L	D	.	.	.	A	K	.	S	T	S	I	Q	V	I	V	K	E	G	G	L	K	L	I	Q	I	Q	D	N	G	T	G	I	R	K	E	D	.	.	.	.	.	.
Template Known Secondary structure																								S	.	.															.	.	.	T	T	.		S								G	G	G	T	S								S					G	G	G	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.															.	.	.			.																														.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.				.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		P	A	V	E	L	I	L	C	R	L	H	A	G	G	K	F	S	N	K	N	Y	Q	F	S	G	G	L	H	G	V	G	I	S	V	V	N	A	L	S	K	R	V	E	V	N	V	R	R	.	.	D	G	Q	V	Y	N	I	A	F	E	N	G	E	K	V	Q	D	L	Q	V	V	G	T	C	G	K	R	N	T	G
Query Conservation																																																		.	.
Alig confidence		.	.												.	.	.	.	.	.	.																				.									.	.																							.	.	.	.
Template Conservation		.	.												.	.	.	.	.	.	.																				.																																	.	.	.	.
Template Sequence		.	.	L	D	I	V	C	E	R	F	T	T	S	.	.	.	.	.	.	.	K	L	Q	S	F	G	F	R	G	E	A	L	A	S	I	S	H	V	A	.	H	V	T	I	T	T	K	T	A	D	G	K	C	A	Y	R	A	S	Y	S	D	G	K	L	K	A	P	P	K	P	C	A	.	.	.	.	G	N	Q	G
Template Known Secondary structure		.	.	G	G	T	T	T	S	T	T			S	.	.	.	.	.	.	.	S							T	T									S	S	.									T	T		S	S								T	T			S	S							.	.	.	.			S
Template Predicted Secondary structure		.	.												.	.	.	.	.	.	.																				.																																	.	.	.	.
Template SS confidence
				73	.	.	.	.	.	.	80	.	.	.								.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.					.	.	.	.
		163	.	.	.	.	.	.	170								.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.
Query Sequence		T	S	V	H	F	W	P	D	.	.	.	.	.	.	.	E	T	F	F	D	S	P	R	F	S	V	S	R	L	T	H	V	L	K	A	K	A	V	L	C	P	G	V	E	I	T	F	K	D
Query Conservation										.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	Q	I	T	V	E	D	L	F	Y	N	I	A	T	R	R	K	A	L	K	N	P	S	E	E	Y	G	K	I	L	E	V	V	G	R	Y	S	V	H	N	A	G	I	S	F	S	V	K	K
Template Known Secondary structure								S	T	T	T	T							T	S																						T	T
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions