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Job DescriptionP20083
Confidence100.00%DateThu Jan 5 11:37:45 GMT 2012
Rank1Aligned Residues344
% Identity61%Templatec3lnuA_
PDB info PDB header:isomeraseChain: A: PDB Molecule:topoisomerase iv subunit b; PDBTitle: crystal structure of pare subunit
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   15....20.........30.........40.........50.........60.........70.........80.........90....
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Query Sequence  GLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRL
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Template Sequence  GLDPVKRRPGMYTDTARPNHLAQEVIDNSVDEALAGHAKQIEVTLYKDGSCEVSDDGRGMPVDIHPEEKIPGVELIL. . .
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GGGTS
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SB
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   5960.........70.........80.........90.........100.........110.........120.........130.....
 
   95....100.........110.........120.........130.........140.........150.........160.........170....
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Query Sequence  HAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF
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Template Sequence  . . . . . . . . . . . . . . . . . TRLGVSVVNALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYF
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TTTTT
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   136...140.........150.........160.........170.........180.........190........
 
   175....180.........190.........200.........210.........220.........230.........240.........250....
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Query Sequence  DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALL
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Template Sequence  DTPKFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYFENGLRDYLKGEMAEHEMLPADLFVGSLKKDTEIVDWAAG
Template Known Secondary structure  S
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STT
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   219220.........230.........240.........250.........260.........270.........280.........290........
 
   255....260.........270.........280.........290.........300.........310.........320.........330....
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Query Sequence  WLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTK
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Template Sequence  WVPEGEL. VQESYVNLIPTAQHGTHVNGLRSGLTDALREFCDFRNLLPRGVKLAPEDVWDRVTFVLSLKMTDPQFSGQTK
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SSS

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TT
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   299300..... ....310.........320.........330.........340.........350.........360.........370.......
 
   335....340.........350.........360.........370.........
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Query Sequence  ERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRR
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Template Sequence  ERLSSRQAAGFIEGAAHDAFSLYLNQNVEIGEKIAQIAIDRASAR
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T
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   378.380.........390.........400.........410.........420..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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