Job Description P20083 Confidence 99.81% Date Thu Jan 5 11:37:45 GMT 2012 Rank 28 Aligned Residues 287 % Identity 18% Template c3h4lB_ PDB info PDB header:dna binding protein, protein binding Chain: B: PDB Molecule:dna mismatch repair protein pms1; PDBTitle: crystal structure of n terminal domain of a dna repair protein Resolution 2.50 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.				100	.	.	.	.	.	.
Predicted Secondary structure																																		.	.																																					.	.	.
Query SS confidence																																		.	.																																					.	.	.
Query Sequence		P	N	H	L	G	Q	E	V	I	D	N	S	V	D	E	A	L	A	G	H	A	K	R	V	D	V	I	L	H	A	D	Q	.	.	S	L	E	V	I	D	D	G	R	G	M	P	V	D	I	H	P	E	E	G	V	P	A	V	E	L	I	L	C	R	L	H	A	G	G	K	.	.	.	F	S	N	K	N	Y	Q
Query Conservation																																		.	.																																					.	.	.
Alig confidence																.	.	.			.													.	.																		.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation																.	.	.			.																																.	.	.	.	.	.	.	.	.
Template Sequence		L	T	T	A	V	K	E	L	V	D	N	S	I	D	.	.	.	A	N	.	A	N	Q	I	E	I	I	F	K	D	Y	G	L	E	S	I	E	C	S	D	N	G	D	G	I	D	P	S	N	Y	E	.	.	.	.	.	.	.	.	.	F	L	A	L	K	H	Y	T	S	K	I	A	K	F	Q	D	V	A	K	V
Template Known Secondary structure																.	.	.	T	T	.		S								G	G	G	T	S								S					T	T	T	G	G	.	.	.	.	.	.	.	.	.	G	S	S									T	T	S	S
Template Predicted Secondary structure																.	.	.			.																																.	.	.	.	.	.	.	.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.				.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.										.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.							.	170	.	.	.	.			.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.							.	.
Query SS confidence																																																																.	.	.	.	.	.							.	.
Query Sequence		F	S	G	G	L	H	G	V	G	I	S	V	V	N	A	L	S	K	R	V	E	V	N	V	R	R	D	G	Q	V	Y	N	I	A	F	E	N	G	E	K	V	Q	D	L	Q	V	V	G	T	C	G	K	R	N	T	G	T	S	V	H	F	W	.	.	.	.	.	.	P	D	E	T	F	F	.	.	D	S	P	R
Query Conservation																																																																.	.	.	.	.	.							.	.
Alig confidence																																																		.	.	.	.											.	.	.	.	.	.							.	.
Template Conservation																																																		.	.	.	.
Template Sequence		Q	T	L	G	F	R	G	E	A	L	S	S	L	C	G	I	A	K	L	S	V	I	T	T	T	S	P	P	K	A	D	K	L	E	Y	D	M	V	G	H	I	T	S	K	T	T	T	S	.	.	.	.	R	N	K	G	T	T	V	L	V	S	Q	L	F	H	N	L	P	V	R	Q	K	E	F	S	K	T	F	K
Template Known Secondary structure		T	T	S	S			S	S								S	S								S	S	T	T									T	T	S										.	.	.	.		S	S								S	T	T	T	T										T	T
Template Predicted Secondary structure																																																		.	.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.					170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.					.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.																																			.	.	.	.	.
Query SS confidence																																							.	.	.	.																																			.	.	.	.	.
Query Sequence		F	S	V	S	R	L	T	H	V	L	K	A	K	A	V	L	C	P	G	V	E	I	T	F	K	D	E	I	N	N	T	E	Q	R	W	C	Y	.	.	.	.	Q	D	G	L	N	D	Y	L	A	E	A	V	N	G	L	P	T	L	P	E	K	P	F	I	G	N	F	A	G	D	T	E	A	V	.	.	.	.	.
Query Conservation																																							.	.	.	.																																			.	.	.	.	.
Alig confidence																																							.	.	.	.																																			.	.	.	.	.
Template Conservation
Template Sequence		R	Q	F	T	K	C	L	T	V	I	Q	G	Y	A	I	I	N	A	A	I	K	F	S	V	W	N	I	T	P	K	G	K	K	N	L	I	L	S	T	M	R	N	S	S	M	R	K	N	I	S	S	V	F	G	A	G	G	M	R	G	L	E	E	V	D	L	V	L	D	L	N	P	F	K	N	R	M	L	L	D
Template Known Secondary structure																			T	T	S									T	T	S										T	T												T	G	G	G	T	T	T											G	G	G			S
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
					250	.	.	.		.	.	.	.	.	.	260								.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.					.								.	.	.	.	.	.	.
Query SS confidence		.	.	.					.								.	.	.	.	.	.	.
Query Sequence		.	.	.	D	W	A	L	.	L	W	L	P	E	G	G	.	.	.	.	.	.	.	E	L	L	T	E	S	Y	V	N	L	I	P	T	M	Q	G	G	T	H	V	N	G	L	R	Q	G	L	L	D	A	M	R	E	F	C	E	Y	R	N	I	L	P	R	G	V	K	L	S	A	E	D	I	W	D	R	C	A	Y
Query Conservation		.	.	.					.								.	.	.	.	.	.	.
Alig confidence		.	.	.					.								.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	D	Y	K	I	R	V	K	G	Y	I	S	Q	N	S	F	G	C	G	R	N	S	K	D	R	Q	F	I	Y	V	N	K	R	P	V	E	Y	.	.	.	.	.	.	.	.	.	S	T	L	L	K	C	C	N	E	V	Y	K	T	F	N	.	.	.	.	.	.	.	.	.	.	.	.	N	V	Q	F	P	A	V
Template Known Secondary structure															S	S	T	T	S	S	B	S	S	T	T	S						S	S	S	B				.	.	.	.	.	.	.	.	.													T	T		.	.	.	.	.	.	.	.	.	.	.	.	T	T		B
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.										.	.	.	.	.	.	330	.	.	.	.	.	.	.	.													.	340	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.			.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		V	L	S	V	K	M	Q	D	P	Q	F	A	G	Q	T	K	E	.	.	R	L	S	S	R	Q	C	A	A	F	V	S	G	V	V	K	D	A	F	I	L	W	L	N	Q
Query Conservation																			.	.
Alig confidence									.										.	.								.	.	.
Template Conservation									.																			.	.	.
Template Sequence		F	L	N	L	E	L	P	.	M	S	L	I	D	P	D	K	R	V	I	L	L	H	N	E	R	A	.	.	.	V	I	D	I	F	K	T	T	L	S	D	Y	Y	N	R
Template Known Secondary structure									.	G	G	G	B				S					B	T	T				.	.	.
Template Predicted Secondary structure									.																			.	.	.
Template SS confidence
		346	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370				.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions