Job Description P20083 Confidence 100.00% Date Thu Jan 5 11:37:45 GMT 2012 Rank 13 Aligned Residues 197 % Identity 47% Template c3fofD_ PDB info PDB header:isomerase/dna Chain: D: PDB Molecule:dna topoisomerase 4 subunit b; PDBTitle: structural insight into the quinolone-dna cleavage complex2 of type iia topoisomerases Resolution 4.00 Å

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		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	Q	D	L	N	R	T	E	L	F	L	V	E	G	D	S	A	G	G	S	A	K	Q	A	R	D	R	E	Y	Q	A	I	M	P	L	K	G	K	I	L	N	T	W	E	V	S	S	D	E	V	L	A	S	Q	E	V	H	D	I	S	V	A	I	G	I	D	P	D	S	D	D	L	S	Q	L	R	Y	G	K
Query Conservation
Alig confidence																														.	.								.	.																											.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.								.	.																											.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Q	S	N	P	A	K	N	E	L	Y	L	V	E	G	D	S	A	G	G	S	A	K	Q	G	R	D	R	.	.	K	F	I	L	P	L	R	.	.	V	I	N	T	A	K	A	K	M	A	D	I	L	K	N	E	E	I	N	T	M	I	Y	T	I	G	.	.	.	.	.	.	.	.	.	.	A	G	V	G	K
Template Known Secondary structure							S	S																				T	T	.	.								.	.				S	T	T	S							T										S	S		.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.								.	.																											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.			.	.	.	450	.	.	.			.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.											480	.	.	.	.
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	C	I	L	A	D	A	D	S	D	G	L	H	I	A	T	L	L	C	A	L	F	V	K	H	F	R	A	L	V	K	H	G	H	V	Y	V	A	L	P	P	L	Y	R	I	D	L	G	K	E	V	Y	Y	A	L	T	E	E	E	K	E	G	V	L	E	Q	L	K	R	K	K	G	K	P	N	V	Q	R	F	K
Query Conservation
Alig confidence																																																																						.	.	.	.
Template Conservation																																																																						.	.	.	.
Template Sequence		I	I	I	M	T	D	A	D	T	D	G	A	H	I	Q	T	L	L	L	T	F	F	Y	R	Y	M	R	P	L	V	E	A	G	H	V	Y	I	A	L	P	P	L	Y	K	M	S	K	G	K	G	K	K	E	E	V	A	Y	A	W	T	D	G	E	L	E	E	L	K	.	.	.	.	G	A	T	L	Q	R	Y	K
Template Known Secondary structure								S																	T	S	S							T													B			T	T	T							S		T	T	T	T	G	G	G			.	.	.	.		S	B
Template Predicted Secondary structure																																																																						.	.	.	.
Template SS confidence
		501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.					.	570	.	.	.	.	.	.
		565	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	G	E	M	N	P	M	Q	L	R	E	T	T	L	D	P	N	T	R	R	L	V	Q	L	T	I	D	D	E	D	D	Q	R	T	D	A	M	M	D	M	L	L	A	K	K	R	S	E	D	R	R	N	W	L	Q	E	K
Query Conservation
Alig confidence																													.	.																		.
Template Conservation																													.	.																		.
Template Sequence		G	L	G	E	M	N	A	D	Q	L	W	E	T	T	M	N	P	E	T	R	T	L	I	R	V	T	I	.	.	E	D	L	A	R	A	E	R	R	V	N	V	L	M	G	D	K	.	V	E	P	R	R	K	W	I	E	D	N
Template Known Secondary structure		S	T	T	S	S		T	T	G	G	G	G	T	S	S		S	T	T	T			B			T	T	.	.			S	S	S							S	S	S				.	S							T	T
Template Predicted Secondary structure																													.	.																		.
Template SS confidence
		582	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.			.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.		.	.	.	.	630	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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