Job Description P20083 Confidence 100.00% Date Thu Jan 5 11:37:45 GMT 2012 Rank 8 Aligned Residues 304 % Identity 28% Template c3cwvB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:dna gyrase, b subunit, truncated; PDBTitle: crystal structure of b-subunit of the dna gyrase from myxococcus2 xanthus Resolution 1.95 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30				.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence		L	E	P	V	R	R	R	P	G	M	Y	T	D	T	T	.	.	.	R	P	N	H	L	G	Q	E	V	I	D	N	S	V	D	E	A	L	A	G	H	A	K	R	V	D	V	I	L	H	A	D	Q	S	L	E	V	I	D	D	G	R	G	M	P	V	D	I	H	P	E	E	G	V	P	A	V	E	L	I	L	C
Query Conservation																	.	.	.
Alig confidence																	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	E	N	V	R	K	R	P	G	M	Y	C	G	D	V	G	E	Y	G	L	H	H	L	V	Y	F	L	L	D	V	A	Y	E	E	A	R	R	G	E	C	R	D	V	V	L	E	V	G	G	D	G	S	I	A	L	F	C	T	S	S	M	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S						S		S	S																					T	T											T	T	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	H	A	G	G	K	F	S	N	K	N	Y	Q	F	S	G	G	L	H	G	V	G	I	S	V	V	N	A	L	S	K	R	V	E	V	N	V	R	R	D	G	Q	V	Y	N	I	A	F	E	N	G	E	K	V	Q	D	L	Q	V	V	G	T	C	G	K	R	N	T	G	T	S	V	H	F	W	P	D	E	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																									.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																									.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	L	A	L	S	S	R	Y	Q	V	D	I	.	W	D	G	R	Q	W	R	V	M	G	E	H	G	H	P	Q	G	M	E	P	M	P	V	S	.	.	.	A	E	R	G	V	R	V	H	F	V	P	D	A	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T									.				S								T	T									S	S		.	.	.		S	S										T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																									.	.	.
Template SS confidence
																											103	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	F	D	S	P	R	F	S	V	S	R	L	T	H	V	L	K	A	K	A	V	L	C	P	G	V	E	I	T	F	K	D	E	I	N	N	T	E	Q	R	W	C	Y	Q	D	G	L	N	D	Y	L	A	E	A	V	N	G	L	P	T	L	P	E	K	P	F	I	G	N	F	A	G	D	T	E	A	V	D	W	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	F	E	V	L	A	F	D	R	A	R	L	S	R	R	C	N	E	L	A	A	L	A	P	G	L	R	V	S	F	A	D	L	Q	R	G	E	R	T	L	W	H	L	P	G	G	V	A	Q	W	A	H	V	L	T	E	A	R	P	Q	L	H	P	E	P	V	V	F	D	F	T	W	D	G	L	R	V	Q	C	A
Template Known Secondary structure		T		S																				S	T	T								T	T	T	T								T	T											T	T	S		B	S	S	S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.			.	330
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		L	L	W	L	P	E	G	G	E	L	L	T	E	S	Y	V	N	L	I	P	T	M	Q	G	G	T	H	V	N	G	L	R	Q	G	L	L	D	A	M	R	E	F	C	E	Y	R	N	I	L	P	R	G	V	K	L	S	A	E	D	I	W	D	R	C	A	Y	V	L	S	V	K	M	Q	D	P	Q	.	.	F	A
Query Conservation																																																																														.	.
Alig confidence											.																																						.	.	.	.	.																									.	.
Template Conservation											.																																						.	.	.	.	.
Template Sequence		L	Q	W	C	E	D	E	D	S	.	T	L	L	S	F	A	N	A	V	R	T	V	R	H	G	A	H	V	K	G	V	T	Q	A	L	R	G	A	L	A	K	L	S	G	E	T	R	.	.	.	.	.	G	A	F	P	W	A	R	V	A	Q	G	L	T	A	I	V	A	V	S	G	P	R	R	Q	M	A	F	A
Template Known Secondary structure					B	S	S	S			.							T	T				T	T		B																			T			G	.	.	.	.	.	G	G	S						T	T	T											G	G	G			B	S
Template Predicted Secondary structure											.																																						.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.						.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	T	K	E	R	L	S	S	R	Q	C	A	A	F	V	S	G	V	V	K	D	A	F	I	L	W	L	N	Q	N	V	Q	A	A	E	L	L	A	E	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	P	T	K	E	L	L	A	I	P	G	L	E	E	A	I	R	K	Q	L	Q	P	L	F	I	E	L	L	R	E	H	P	V	T	P	A	L	L	A	R	R
Template Known Secondary structure		S	S	S	T	T	S	B			T	T																		T	T		T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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