Job Description P20083 Confidence 100.00% Date Thu Jan 5 11:37:45 GMT 2012 Rank 16 Aligned Residues 178 % Identity 44% Template c2zjtB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit b; PDBTitle: crystal structure of dna gyrase b' domain sheds lights on2 the mechanism for t-segment navigation Resolution 2.80 Å

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		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.		.	.	.	.	.	480	.	.	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		Q	D	L	N	R	T	E	L	F	L	V	E	G	D	S	A	G	G	S	A	K	Q	A	R	D	R	E	Y	Q	A	I	M	P	L	K	G	K	I	L	N	T	W	E	V	S	S	D	E	V	L	A	S	Q	E	V	H	D	I	S	V	A	I	G	I	D	P	D	S	.	D	D	L	S	Q	L	R	Y	G	K	I
Query Conservation																																																																						.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.																							.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Sequence		T	D	P	R	K	S	E	L	Y	V	V	E	G	D	M	F	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	I	L	P	L	R	G	K	.	.	.	.	.	.	.	.	.	D	R	V	L	K	N	T	E	V	Q	A	I	I	T	A	L	G	T	G	I	H	D	E	F	D	I	G	K	L	R	Y	H	K	I
Template Known Secondary structure				G	G	G												.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.			G	G	G	S												S			G	G	G			G	G	G				S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.													.	.	.	.	.	.	.	510	.										.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.		.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.					.	.	.	.	560
Predicted Secondary structure																																																		.																							.	.	.	.
Query SS confidence																																																		.																							.	.	.	.
Query Sequence		C	I	L	A	D	A	D	S	D	G	L	H	I	A	T	L	L	C	A	L	F	V	K	H	F	R	A	L	V	K	H	G	H	V	Y	V	A	L	P	P	L	Y	R	I	D	L	G	K	.	E	V	Y	Y	A	L	T	E	E	E	K	E	G	V	L	E	Q	L	K	R	K	K	.	.	.	.	G	K	P	N	V
Query Conservation																																																		.																							.	.	.	.
Alig confidence																																																		.																							.	.	.	.
Template Conservation
Template Sequence		V	L	M	A	D	A	D	V	D	G	Q	H	I	S	T	L	L	L	T	L	L	F	R	F	M	R	P	L	I	E	N	G	H	V	F	L	A	Q	P	P	L	Y	K	L	K	W	Q	R	S	D	P	E	F	A	Y	S	D	R	E	R	D	G	L	L	E	A	G	L	K	A	G	K	K	I	N	K	E	D	G	I
Template Known Secondary structure							S	S	S	T	T		T	T										T	T	S	T					T	T									S						S	S	S						S	S													T	T	T					T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		567	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	F	K	G	L	G	E	M	N	P	M	Q	L	R	E	T	T	L	D	P	N	T	R	R	L	V	Q	L	T	I	D	D	E	D	D	Q	R	T	D	A	M	M	D	M	L	L
Query Conservation
Alig confidence																																	.	.
Template Conservation																																	.	.
Template Sequence		Q	R	Y	K	G	L	G	E	M	D	A	K	E	L	W	E	T	T	M	D	P	S	V	R	V	L	R	Q	V	T	L	.	.	D	D	A	A	A	A	D	E	L	F	S	I	L	M
Template Known Secondary structure						S	S	S	S	S		T	T	T	T					T		T	T	T									.	.													T
Template Predicted Secondary structure																																	.	.
Template SS confidence
		647	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.			.	.	680	.	.	.	.	.	.	.	.	.	690	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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