Job Description P20083 Confidence 100.00% Date Thu Jan 5 11:37:45 GMT 2012 Rank 2 Aligned Residues 343 % Identity 17% Template c1zxnB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:dna topoisomerase ii, alpha isozyme; PDBTitle: human dna topoisomerase iia atpase/adp Resolution 2.51 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30																										.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query Sequence		A	D	A	I	E	V	L	T	G	L	E	P	V	R	R	R	P	G	M	Y	T	D	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	N	H	L	G	Q	E	V	I	D	N	S	V	D	E	A	L	A	G	.	H	A	K	R	V	D	V	I	L	H
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation
Template Sequence		E	R	I	Y	Q	K	K	T	Q	L	E	H	I	L	L	R	P	D	T	Y	I	G	S	V	E	L	V	T	Q	Q	M	W	V	Y	D	E	D	V	G	I	N	Y	R	E	V	T	F	V	P	G	L	Y	K	I	F	D	E	I	L	V	N	A	A	D	N	K	Q	R	D	P	K	M	S	C	I	R	V	T	I	D
Template Known Secondary structure					S													T								S											T	T	T																											G	G	G	T		T	T
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		61	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.
Predicted Secondary structure				.																																																																						.	.
Query SS confidence				.																																																																						.	.
Query Sequence		A	D	.	Q	S	L	E	V	I	D	D	G	R	G	M	P	V	D	I	H	P	E	E	G	V	P	A	V	E	L	I	L	C	R	L	H	A	G	G	K	F	S	N	K	N	Y	Q	F	S	G	G	L	H	G	V	G	I	S	V	V	N	A	L	S	K	R	V	E	V	N	V	R	.	.	R	D	G	Q	V	Y
Query Conservation				.																																																																						.	.
Alig confidence				.																																																																						.	.
Template Conservation
Template Sequence		P	E	N	N	L	I	S	I	W	N	N	G	K	G	I	P	V	V	E	H	K	V	E	K	M	Y	V	P	A	L	I	F	G	Q	L	L	T	S	S	N	Y	D	D	D	E	K	K	V	T	G	G	R	N	G	Y	G	A	K	L	C	N	I	F	S	T	K	F	T	V	E	T	A	S	R	E	Y	K	K	M	F
Template Known Secondary structure		T	T	T	T								S	S					S			T	T	T	T										S	S	S			S				G	G	G					S			S	S									T											G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																																															.	.	.
Query SS confidence																																															.	.	.
Query Sequence		N	I	A	F	E	N	G	E	K	V	Q	D	L	Q	V	V	G	T	C	G	K	R	N	T	G	T	S	V	H	F	W	P	D	E	T	F	F	D	S	P	R	F	S	V	S	.	.	.	R	L	T	H	V	L	K	A	K	A	V	L	C	P	G	V	E	I	T	F	K	D	E	I	N	N	T	E	Q	R	W	C
Query Conservation																																															.	.	.
Alig confidence																								.																							.	.	.																									.	.	.	.	.	.	.
Template Conservation																								.																																																		.	.	.	.	.	.	.
Template Sequence		K	Q	T	W	M	D	N	M	G	R	A	G	E	M	E	L	K	P	F	N	G	E	.	D	Y	T	C	I	T	F	Q	P	D	L	S	K	F	K	M	Q	S	L	D	K	D	I	V	A	L	M	V	R	R	A	Y	D	I	A	G	S	T	K	D	V	K	V	F	L	N	G	N	K	.	.	.	.	.	.	.	L
Template Known Secondary structure							T	T	T	T												S	S	.											G	G	G	G	T		S	S																				S	S	S						T	T			.	.	.	.	.	.	.
Template Predicted Secondary structure																								.																																																		.	.	.	.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.								.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	D	G	L	N	D	Y	L	A	E	A	V	N	G	L	P	T	L	P	E	K	P	F	I	G	N	F	A	G	D	T	E	A	V	D	W	A	L	L	W	L	P	E	G	G	E	L	L	T	E	S	Y	V	N	L	I	P	T	M	Q	G	G	T	H	V	N	G	L	R	Q	G	L	L	D	A	M	R	E	F
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	V	K	G	F	R	S	Y	V	D	M	Y	L	K	K	.	.	.	.	.	.	.	.	.	.	.	.	V	I	H	E	Q	V	N	H	R	W	E	V	C	L	T	M	S	E	K	G	F	Q	Q	I	S	F	V	N	S	I	A	T	S	K	G	G	R	H	V	D	Y	V	A	D	Q	I	V	T	K	L	V	D	V
Template Known Secondary structure		S															.	.	.	.	.	.	.	.	.	.	.	.								T	T									S	S	S								T	T				T	T		B
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.													.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	E	Y	R	N	I	L	P	R	G	V	K	L	S	A	E	D	I	W	D	R	C	A	Y	V	L	S	V	K	M	Q	D	P	Q	F	A	G	Q	T	K	E	R	L	S	S	R	Q	C	A	A	F	V	S	G	V	V	K	D	A	F	I	L	W	L	N	Q	N	V	Q	A	A	E	L	L	A	E	M	A	I	S
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.
Template Sequence		V	K	K	K	.	.	.	.	.	.	.	.	.	K	A	H	Q	V	K	N	H	M	W	I	F	V	N	A	L	I	E	N	P	T	F	D	S	Q	T	K	E	N	M	T	L	Q	P	K	S	F	G	S	T	C	Q	L	S	E	K	F	I	K	A	A	I	G	C	G	.	.	.	.	.	I	V	E	S	I	L	N
Template Known Secondary structure						.	.	.	.	.	.	.	.	.							T	T										S	S			B	S	S	T	T			S	B				G	G	G	S	S	S															S	S	.	.	.	.	.	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.
Template SS confidence
		341	.	.	.										.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.						400	.	.	.	.	.	.
		375	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	Q	R	R	M	R	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	V	K	F	K	A	Q	V	Q
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		414	.	.	.	.	.	420	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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