Job Description P20083 Confidence 100.00% Date Thu Jan 5 11:37:45 GMT 2012 Rank 4 Aligned Residues 349 % Identity 23% Template c1qzrA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase ii; PDBTitle: crystal structure of the atpase region of saccharomyces cerevisiae2 topoisomerase ii bound to icrf-187 (dexrazoxane) Resolution 1.90 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30																											.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query Sequence		A	D	A	I	E	V	L	T	G	L	E	P	V	R	R	R	P	G	M	Y	T	D	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	N	H	L	G	Q	E	V	I	D	N	S	V	D	E	A	L	A	G	.	H	A	K	R	V	D	V	I	L
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation
Template Sequence		S	D	K	Y	Q	K	I	S	Q	L	E	H	I	L	K	R	P	D	T	Y	I	G	S	V	E	T	Q	E	Q	L	Q	W	I	Y	D	E	E	T	D	C	M	I	E	K	N	V	T	I	V	P	G	L	F	K	I	F	D	E	I	L	V	N	A	A	D	N	K	V	R	D	P	S	M	K	R	I	D	V	N	I
Template Known Secondary structure					S													T							S	S											T	T	T	T																																T	T
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.
Predicted Secondary structure				.																																																																						.	.
Query SS confidence				.																																																																						.	.
Query Sequence		H	A	.	D	Q	S	L	E	V	I	D	D	G	R	G	M	P	V	D	I	H	P	E	E	G	V	P	A	V	E	L	I	L	C	R	L	H	A	G	G	K	F	S	N	K	N	Y	Q	F	S	G	G	L	H	G	V	G	I	S	V	V	N	A	L	S	K	R	V	E	V	N	V	.	.	R	R	D	G	Q	V
Query Conservation				.																																																																						.	.
Alig confidence				.																																																																						.	.
Template Conservation
Template Sequence		H	A	E	E	H	T	I	E	V	K	N	D	G	K	G	I	P	I	E	I	H	N	K	E	N	I	Y	I	P	E	M	I	F	G	H	L	L	T	S	S	N	Y	D	D	D	E	K	K	V	T	G	G	R	N	G	Y	G	A	K	L	C	N	I	F	S	T	E	F	I	L	E	T	A	D	L	N	V	G	Q	K
Template Known Secondary structure			T	T	T	T								S	S					S	B		T	T	T		S	B								S	S	S			S				T	T	S					S			S	S									T											T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	N	I	A	F	E	N	G	E	K	V	Q	D	L	Q	V	V	G	T	C	G	K	R	N	T	G	T	S	V	H	F	W	P	D	E	T	F	F	D	S	P	R	F	S	V	S	R	L	T	H	V	L	K	A	K	A	V	L	C	P	G	V	E	I	T	F	K	D	E	I	N	N	T	E	Q	R	W	C	Y	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	V	Q	K	W	E	N	N	M	S	I	C	H	P	P	K	I	T	S	Y	K	K	G	P	S	Y	T	K	V	T	F	K	P	D	L	T	R	F	G	M	K	E	L	D	N	D	I	L	G	V	M	R	R	R	V	Y	D	I	N	G	S	V	R	D	I	N	V	Y	L	N	G	K	S	L	K	I	R	N	F	K
Template Known Secondary structure								T	T	T	T												S	S												G	G	G	G	T		S	S																				S	T	T						T	T							S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	L	N	D	Y	L	A	E	A	V	N	G	L	P	T	L	P	E	K	P	F	I	G	N	F	A	G	D	T	E	A	V	D	W	A	L	L	W	L	P	E	G	G	E	L	L	T	E	S	Y	V	N	L	I	P	T	M	Q	G	G	T	H	V	N	G	L	R	Q	G	L	L	D	A	M	R	E	F	C	E
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.																		.	.
Template Sequence		N	Y	V	E	L	Y	L	K	S	L	I	P	T	.	.	.	.	.	.	.	.	.	.	I	L	Y	E	R	I	N	N	R	W	E	V	A	F	A	V	S	.	.	D	I	S	F	Q	Q	I	S	F	V	N	S	I	A	T	T	M	G	G	T	H	V	N	Y	I	T	D	Q	I	V	K	K	I	S	E	I	L	K
Template Known Secondary structure						T	T	T	T	T				S	.	.	.	.	.	.	.	.	.	.								T	T									.	.	S	S	S								T	T				T	T		B
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.																		.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.											.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.			.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	N	I	L	P	R	G	V	K	L	S	A	E	D	I	W	D	R	C	A	Y	V	L	S	V	K	M	Q	D	P	Q	F	A	G	Q	T	K	E	R	L	S	S	R	Q	C	A	A	F	V	S	G	V	V	K	D	A	F	I	L	W	L	N	Q	N	V	Q	A	A	E	L	L	A	E	M	A	I	S	S	A
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.
Template Sequence		K	.	.	.	.	.	.	.	.	.	V	K	S	F	Q	I	K	N	N	M	F	I	F	I	N	C	L	I	E	N	P	A	F	T	S	Q	T	K	E	Q	L	T	T	R	V	K	D	F	G	S	R	C	E	I	P	L	E	Y	I	N	K	I	M	K	T	D	.	.	.	.	.	L	A	T	R	M	F	E	I	A
Template Known Secondary structure			.	.	.	.	.	.	.	.	.								T	T										S	S			B	S	S	T	T			S	B				G	G	G	S	S	S													T	T	S		.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.
Template SS confidence
		334										.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390						.	.	.	.	.	.	.	.	.
		377	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	R	M	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	N	E	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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