Job Description P20083 Confidence 99.76% Date Thu Jan 5 11:37:45 GMT 2012 Rank 30 Aligned Residues 183 % Identity 24% Template c1mx0D_ PDB info PDB header:isomerase Chain: D: PDB Molecule:type ii dna topoisomerase vi subunit b; PDBTitle: structure of topoisomerase subunit Resolution 2.30 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30				.	.	.	.	.	.	.	.	.	40	.	.	.	.	.				.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.					.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.																.	.	.																				.	.	.	.
Query SS confidence																										.	.	.																.	.	.																				.	.	.	.
Query Sequence		A	D	A	I	E	V	L	T	G	L	E	P	V	R	R	R	P	G	M	Y	T	D	T	T	.	.	.	R	P	N	H	L	G	Q	E	V	I	D	N	S	V	D	.	.	.	E	A	L	A	G	H	A	K	R	V	D	V	I	L	H	A	D	Q	S	.	.	.	.	L	E	V	I	D	D	G	R	G	M	P	V
Query Conservation																										.	.	.																.	.	.																				.	.	.	.
Alig confidence																										.	.	.																.	.	.																				.	.	.	.
Template Conservation
Template Sequence		K	E	K	F	T	S	L	S	P	A	E	F	F	K	R	N	P	E	L	A	G	F	P	N	P	A	R	A	L	Y	Q	T	V	R	E	L	I	E	N	S	L	D	A	T	D	V	H	G	I	L	P	N	I	K	I	T	I	D	L	I	D	D	A	R	Q	I	Y	K	V	N	V	V	D	N	G	I	G	I	P	P
Template Known Secondary structure																		G	G	G	G	T		S	S																			T	T	G	G	G	T														T	T	T	T										S					G
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.						.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.							.	.	.
Predicted Secondary structure																																																		.	.	.	.	.																			.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.																			.	.	.	.	.	.
Query Sequence		D	I	H	P	E	E	G	V	P	A	V	E	L	I	L	C	R	L	H	A	G	G	K	F	S	N	K	N	Y	Q	F	S	G	G	L	H	G	V	G	I	S	V	V	N	A	L	S	K	.	.	.	.	.	R	V	E	V	N	V	R	R	D	G	Q	V	Y	N	I	A	F	E	.	.	.	.	.	.	N	G	E
Query Conservation																																																		.	.	.	.	.																			.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.																	.	.	.																				.	.	.	.	.																			.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.																	.	.	.
Template Sequence		Q	E	.	.	.	.	.	.	.	.	V	P	N	A	F	G	R	V	L	Y	S	S	K	Y	V	N	.	.	.	R	Q	T	R	G	X	Y	G	L	G	V	K	A	A	V	L	Y	S	Q	X	H	Q	D	K	P	I	E	I	E	T	S	P	V	N	S	K	R	I	Y	T	F	K	L	K	I	D	I	N	K	N	E
Template Known Secondary structure		G	G	.	.	.	.	.	.	.	.							S	S	S			S			S	S	.	.	.	S			S			S	S																									T	T		S											T	T	T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.																	.	.	.
Template SS confidence
		84	.									.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.				.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	Q	D	L	Q	V	V	G	T	C	G	K	R	N	T	G	T	S	V	H	F	W	P	D	E	T	F	F	D	S	P	R	F	S	V	S	R	L	T	H	V	L	K	A	K	A	V	L	C	P	G	V	E	I	T	F	K	D
Query Conservation
Alig confidence																																		.	.	.	.
Template Conservation																																		.	.	.	.
Template Sequence		P	I	I	V	E	R	G	S	V	E	N	T	R	G	F	H	G	T	S	V	A	I	S	I	P	G	D	W	P	K	A	K	.	.	.	.	S	R	I	Y	E	Y	I	K	R	T	Y	I	I	T	P	Y	A	E	F	I	F	K	D
Template Known Secondary structure														S																				.	.	.	.												T	T		T	T
Template Predicted Secondary structure																																		.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.					.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions