Job Description P20083 Confidence 100.00% Date Thu Jan 5 11:37:45 GMT 2012 Rank 5 Aligned Residues 381 % Identity 36% Template c1ei1B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:dna gyrase b; PDBTitle: dimerization of e. coli dna gyrase b provides a structural mechanism2 for activating the atpase catalytic center Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30					.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.
Query SS confidence																															.	.	.	.
Query Sequence		T	Q	T	Y	N	A	D	A	I	E	V	L	T	G	L	E	P	V	R	R	R	P	G	M	Y	T	D	T	T	.	.	.	.	R	P	N	H	L	G	Q	E	V	I	D	N	S	V	D	E	A	L	A	G	H	A	K	R	V	D	V	I	L	H	A	D	Q	S	L	E	V	I	D	D	G	R	G	M	P	V	D
Query Conservation																															.	.	.	.
Alig confidence																															.	.	.	.
Template Conservation
Template Sequence		S	N	S	S	D	S	S	S	I	K	V	L	K	G	L	D	A	V	R	K	R	P	G	M	Y	I	G	D	T	D	D	G	T	G	L	H	H	M	V	F	E	V	V	D	N	A	I	D	E	A	L	A	G	H	C	K	E	I	I	V	T	I	H	A	D	N	S	V	S	V	Q	D	D	G	R	G	I	P	T	G
Template Known Secondary structure				S		S	G	G	G						T	T						S	T							S	S	S	S																				T	T											T	T	S								S	S					S
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	P	E	E	G	V	P	A	V	E	L	I	L	C	R	L	H	A	G	G	K	F	S	N	K	N	Y	Q	F	S	G	G	L	H	G	V	G	I	S	V	V	N	A	L	S	K	R	V	E	V	N	V	R	R	D	G	Q	V	Y	N	I	A	F	E	N	G	E	K	V	Q	D	L	Q	V	V	G	T	C	G
Query Conservation
Alig confidence																																																																																	.
Template Conservation																																																																																	.
Template Sequence		I	H	P	E	E	G	V	S	A	A	E	V	I	M	T	V	L	H	A	G	G	K	F	D	D	N	S	Y	K	V	S	G	G	L	H	G	V	G	V	S	V	V	N	A	L	S	Q	K	L	E	L	V	I	Q	R	E	G	K	I	H	R	Q	I	Y	E	H	G	V	P	Q	A	P	L	A	V	T	G	E	T	.
Template Known Secondary structure		B		T	T	T	S	S	B								S	T	T		S	S		S	S	S	S	S		S	S		S			S	S									T											T	T									T	T			S	S									.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		K	R	N	T	G	T	S	V	H	F	W	P	D	E	T	F	F	.	D	S	P	R	F	S	V	S	R	L	T	H	V	L	K	A	K	A	V	L	C	P	G	V	E	I	T	F	K	D	E	I	N	N	T	E	Q	R	W	C	Y	Q	D	G	L	N	D	Y	L	A	E	A	V	N	G	L	P	T	L	P	E	K
Query Conservation																			.
Alig confidence		.																	.
Template Conservation		.
Template Sequence		.	E	K	T	G	T	M	V	R	F	W	P	S	L	E	T	F	T	N	V	T	E	F	E	Y	E	I	L	A	K	R	L	R	E	L	S	F	L	D	S	G	V	S	I	R	L	R	D	K	R	D	G	K	E	D	H	F	H	Y	E	G	G	I	K	A	F	V	E	Y	L	N	K	N	K	T	P	I	H	P	N
Template Known Secondary structure		.	S												T	T	T			S			S																	S	T	T								T	T	T										S										T	T	T	S		B	S		S	S
Template Predicted Secondary structure		.
Template SS confidence
			561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		P	F	I	G	N	F	A	G	D	T	E	A	V	D	W	A	L	L	W	L	P	E	G	G	E	L	L	T	E	S	Y	V	N	L	I	P	T	M	Q	G	G	T	H	V	N	G	L	R	Q	G	L	L	D	A	M	R	E	F	C	E	Y	R	N	I	L	P	R	.	G	V	K	L	S	A	E	D	I	W	D	R
Query Conservation																																																																					.
Alig confidence																											.																																										.
Template Conservation																											.
Template Sequence		I	F	Y	F	S	T	E	K	D	G	I	G	V	E	V	A	L	Q	W	N	D	G	F	Q	E	.	N	I	Y	C	F	T	N	N	I	P	Q	R	D	G	G	T	H	L	A	G	F	R	A	A	M	T	R	T	L	N	A	Y	M	D	K	E	G	Y	S	K	K	A	K	V	S	A	T	G	D	D	A	R	E	G
Template Known Secondary structure										T	T										B	S	S				.							T	T				T	T		B																					T	T						T										T	T
Template Predicted Secondary structure																											.
Template SS confidence
		640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.		.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	A	Y	V	L	S	V	K	M	Q	D	P	Q	F	A	G	Q	T	K	E	R	L	S	S	R	Q	C	A	A	F	V	S	G	V	V	K	D	A	F	I	L	W	L	N	Q	N	V	Q	A	A	E	L	L	A	E	M	A	I	S	S	A	Q	R	R	M	R	A	A	K	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	A	V	V	S	V	K	V	P	D	P	K	F	S	S	Q	T	K	D	K	L	V	S	S	E	V	K	S	A	V	E	Q	Q	M	N	E	L	L	A	E	Y	L	L	E	N	P	T	D	A	K	I	V	V	G	K	I	I	D	A	A	R	A	R	E	A	A	R	R	A
Template Known Secondary structure											S	S			B	S	S	T	T			S	B
Template Predicted Secondary structure
Template SS confidence
		719	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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