Job Description P20083 Confidence 100.00% Date Thu Jan 5 11:37:45 GMT 2012 Rank 12 Aligned Residues 204 % Identity 25% Template c1bjtA_ PDB info PDB header:topoisomerase Chain: A: PDB Molecule:topoisomerase ii; PDBTitle: topoisomerase ii residues 409-1201 Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430				.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure																																														.	.	.
Query SS confidence																																														.	.	.
Query Sequence		V	R	K	K	L	T	S	G	P	A	L	P	G	K	L	A	D	C	T	A	Q	D	L	N	R	T	E	L	F	L	V	E	G	D	S	A	G	G	S	A	K	Q	A	R	.	.	.	D	R	E	Y	Q	A	I	M	P	L	K	G	K	I	L	N	T	W	E	V	S	S	D	E	V	L	A	S	Q	E	V	H	D
Query Conservation																																														.	.	.
Alig confidence															.																															.	.	.																					.	.	.	.	.
Template Conservation															.																																																						.	.	.	.	.
Template Sequence		R	K	S	R	I	T	N	Y	P	K	L	E	D	.	A	N	K	A	G	T	K	E	G	Y	K	C	T	L	V	L	T	E	G	D	S	A	L	S	L	A	V	A	G	L	A	V	V	G	R	D	Y	Y	G	C	Y	P	L	R	G	K	M	L	N	V	R	E	A	.	.	.	.	.	L	K	N	A	E	I	Q	A
Template Known Secondary structure								S		T	T		B		.		T	T	T	T	S	G	G	G	G	G								S																S	S	S												S				.	.	.	.	.	.
Template Predicted Secondary structure															.																																																						.	.	.	.	.
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.		.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.						.	.	.	.	.	490	.	.
		464	.	.	.	.	.	470	.	.	.	.			.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.		.	.	.	.	520	.	.	.	.	.	.	.	.	.	530				.	.	.	.	.	.	.
Predicted Secondary structure													.	.																																										.																.	.	.
Query SS confidence													.	.																																										.																.	.	.
Query Sequence		I	S	V	A	I	G	I	D	P	D	S	.	.	D	D	L	S	Q	L	R	Y	G	K	I	C	I	L	A	D	A	D	S	D	G	L	H	I	A	T	L	L	C	A	L	F	V	K	H	F	R	A	L	V	K	.	H	G	H	V	Y	V	A	L	P	P	L	Y	R	I	D	.	.	.	L	G	K	E	V	Y	Y
Query Conservation													.	.																																										.																.	.	.
Alig confidence													.	.																	.	.	.	.	.																					.																.	.	.
Template Conservation																															.	.	.	.	.
Template Sequence		I	K	K	I	M	G	L	Q	H	R	K	K	Y	E	D	T	K	S	L	R	Y	G	H	L	M	I	M	T	D	.	.	.	.	.	S	H	I	K	G	L	I	I	N	F	L	E	S	S	F	L	G	L	L	D	I	Q	G	F	L	L	E	F	I	T	P	I	I	K	V	S	I	T	K	P	T	K	N	T	I	A
Template Known Secondary structure							T			S	S	B			S		S	S	S	S	S		S								.	.	.	.	.															B	T	T	T	T	T	S	T	T	S								S							S	S
Template Predicted Secondary structure																															.	.	.	.	.
Template SS confidence
		498	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.						.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.
		538	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	T	E	E	E	K	E	G	V	L	E	Q	L	K	R	K	K	G	K	P	N	V	Q	R	F	K	G	L	G	E	M	N	P	M	Q	L	R	E	T	T	L	D	P	N	T	R	R	L	V	Q	L	T	I	D	D	E	D	D	Q	R	T	D	A	M	M	D	M	L	L	A	K	K	R	S	E	D	R	R	N
Query Conservation
Alig confidence																					.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	Y	N	M	P	D	Y	E	K	W	R	E	E	E	S	H	K	F	T	.	W	K	Q	K	Y	Y	K	G	L	G	T	S	L	A	Q	E	V	R	E	Y	F	S	N	L	D	R	H	L	K	I	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	S	L	Q
Template Known Secondary structure			S	S											T	T	T	T	S		.										S	T	T																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.		.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.																										.	.	630	.
		618	.	620	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	Q	E	K	G	D	M	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	L	R	Q	Y	E	P	F	I	N
Template Known Secondary structure						S					T
Template Predicted Secondary structure
Template SS confidence
		653	.	.	.	.	.	.	660	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions