Return to main results Retrieve Phyre Job Id

Job DescriptionP31062
Confidence96.04%DateThu Jan 5 11:46:59 GMT 2012
Rank9Aligned Residues108
% Identity13%Templated1r8ea1
SCOP infoPutative DNA-binding domain Putative DNA-binding domain DNA-binding N-terminal domain of transcription activators
Resolution2.40

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20....... ..30.........40.........50.........60.........70.........80..
Predicted Secondary structure 






.

































Query SS confidence 























.






















































Query Sequence  NKKQLADIFGASIRTIQNWQEQGM. PVLRGGGKGNEVLYDSAAVIKWYAERDAEIENEKLRREVEELLQASETDLQPGTI
Query Conservation 

 


   


 


 
    
 .        
    



  
                                   
Alig confidence 























.























...............................
Template Conservation 

 
 
   


  





  


 
   
   


 
    
  
  ...............................
Template Sequence  SIGEVSKLANVSIKALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHLDL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T

TTSS

S
TTT

TGGGG...............................
Template Predicted Secondary structure 





















...............................
Template SS confidence 















































































   7..10.........20.........30.........40.........50.....
 
   83......90.........100.........110.........120.........130.........140..... ....150.........160
Predicted Secondary structure 








..
Query SS confidence 






























































. .














Query Sequence  EYERHRLTRAQADAQELKNARDSAEVVETAFCTFVLSRIAGEIASILDGIPLSVQRRFPELEN. . RHVDFLKRDIIKAMN
Query Conservation    

 
    

   

      
 

    
           
  
  

  
      
  ..     
  

  

 
Alig confidence  ..................












































..














Template Conservation  ..................
  

  
 

 

   
                 
      
      
      
     
Template Sequence  . . . . . . . . . . . . . . . . . . IKSLKYIGTPLEEMKKAQDLEMEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQME
Template Known Secondary structure  ..................TT

TTS
S
Template Predicted Secondary structure  ..................







Template SS confidence 















































































   56...60.........70.........80.........90.........100.........110.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions