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Job DescriptionP0A9F9
Confidence24.92%DateThu Jan 5 11:10:06 GMT 2012
Rank398Aligned Residues193
% Identity16%Templated1pc3a_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution2.16

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   93......100.........110.........120.........130.........140.........150.. .......160......
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Query Sequence  IAIECHSCIQWLTPALENFHKNWPQVEMDFKSGVTFDPQPALQQGELDLVMTSDILPRSG. . . . . . LHYSPMFDYEVRLV
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Template Sequence  AETGSTLLYPLFNLWGPAFHERYPNVTITAQGTGSGAGIAQAAAGTVNIGASDAYLSEGDMAAHKGLMNIALAISAQQVN
Template Known Secondary structure 
TTTSTT

B

TTS
SSS


STT
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   31........40.........50.........60.........70.........80.........90.........100.........110
 
   167..170.... .....180... ......190.........200.........210...
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Query Sequence  LAPDHPLA. . . . . . . . . . . . . AKTRITPED. . . . . . . . . . . . . LASETLLIYPVQRSRLDVWRHFLQPAGVSP. . . . . . .
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Template Sequence  YNLPGVSEHLKLNGKVLAAMYQGTIKTWDDPQIAALNPGVNLPGTAVVPLHRSDGSGDTFLFTQYLSKQDPEGWGKSPGF
Template Known Secondary structure 

TT

S


TS

BTT
STT





B

SS


TTTTTTTT

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   111........120.........130.........140.........150.........160.........170.........180.........190
 
   214.....220.........230.........240.........250.....
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Query Sequence  . . . . . . . . . . . SLKSVDNTLLLIQMVAARMGIAALPHWVVESFERQGLVVTKT. . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GTTVDFPAVPGALGENGNGGMVTGCAETPGCVAYIGISFLDQASQRGLGEAQLGNSSGNFLLPDAQSIQAAAAGFASKTP
Template Known Secondary structure  SSS





TT


STTGGGTT


TTS


STTTTT


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   191........200.........210.........220.........230.........240.........250.........260.........270
 
   256...260.........270.... .....280.....
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Query Sequence  . . . . . . . . . . . . . LGEGLWSRLYAAVRDGEQR. . . QPVTEAFIRSA
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Template Sequence  ANQAISMIDGPAPDGYPIINYEYAIVNNRQKDAATAQTLQAFLHWA
Template Known Secondary structure  TT




TT
S
TT

S
SB
SS
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   271........280.........290.........300.........310......
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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