Job Description P0A9F9 Confidence 99.77% Date Thu Jan 5 11:10:06 GMT 2012 Rank 14 Aligned Residues 194 % Identity 13% Template c3jv9B_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: the structure of a reduced form of oxyr from n. meningitidis Resolution 2.39 Å

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		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	R	L	R	I	A	I	E	C	H	S	C	I	Q	W	L	T	P	A	L	E	N	F	H	K	N	W	P	Q	V	E	M	D	F	K	S	G	V	T	F	D	P	Q	P	A	L	Q	Q	G	E	L	D	L	V	M	T	S	D	I	L	P	R	S	G	L	H	Y	S	P	M	F	D	Y	E	V	R	L	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	A	F	K	L	G	L	I	F	T	V	A	P	Y	L	L	P	K	L	I	V	S	L	R	R	T	A	P	K	X	P	L	X	L	E	E	N	Y	T	H	T	L	T	E	S	L	K	R	G	D	V	D	A	I	I	V	A	E	P	F	Q	E	P	G	I	V	T	E	P	L	Y	D	E	P	F	F	V	I	V
Template Known Secondary structure											T	T	T																	T	T																			T	T	S	S	S						S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	D	H	P	L	A	A	K	T	R	I	T	P	E	D	L	A	S	E	T	L	L	I	Y	P	V	Q	R	S	R	L	D	V	W	R	H	F	L	Q	P	A	G	V	S	P	S	L	K	S	V	D	N	T	L	L	L	I	Q	M	V	A	A	R	M	G	I	A	A	L	P	H	W	V	V	E	S	F	E	R
Query Conservation
Alig confidence																																									.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.
Template Sequence		P	K	G	H	S	F	E	E	L	D	A	V	S	P	R	X	L	G	E	E	Q	V	L	L	L	T	E	G	N	C	X	R	D	Q	V	L	S	S	C	.	.	.	.	.	.	T	N	T	L	Q	G	S	S	I	N	T	I	R	H	X	V	A	S	G	L	A	I	S	V	L	P	A	T	A	L	T	E	N	D	H
Template Known Secondary structure			T	T		G	G	G	G		S	S			S	S	G	G	G	G	S							T	T									T	T		.	.	.	.	.	.							S	S										T	T	S							G	G	G			G	G	G	G
Template Predicted Secondary structure																																									.	.	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.							.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	L	V	V	T	K	T	L	G	E	G	L	W	S	R	L	Y	A	A	V	R	D	G	E	Q	R	Q	P	V	T	E	A	F	I	R	S	A	R	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	L	F	S	I	I	P	F	E	G	T	P	P	S	R	R	V	V	L	A	Y	R	R	N	F	V	R	P	K	A	L	S	A	X	K	A	A	I	X	Q
Template Known Secondary structure		G	T							S	S	S												T	T																T
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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