Job Description P77795 Confidence 100.00% Date Thu Jan 5 12:32:56 GMT 2012 Rank 27 Aligned Residues 223 % Identity 31% Template c3g5uB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding Resolution 3.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.			.
Predicted Secondary structure																.	.	.																																																													.	.
Query SS confidence																.	.	.																																																													.	.
Query Sequence		M	T	Y	A	V	E	F	D	N	V	S	R	L	Y	.	.	.	G	D	V	R	A	V	D	G	V	S	I	A	I	K	D	G	E	F	F	S	M	L	G	P	S	G	S	G	K	T	T	C	L	R	L	I	A	G	F	E	Q	L	S	G	G	A	I	S	I	F	G	K	P	A	S	N	L	P	P	W	.	.	E
Query Conservation																.	.	.																																																													.	.
Alig confidence																.	.	.																																																													.	.
Template Conservation
Template Sequence		L	E	G	N	V	Q	F	S	G	V	V	F	N	Y	P	T	R	P	S	I	P	V	L	Q	G	L	S	L	E	V	K	K	G	Q	T	L	A	L	V	G	S	S	G	C	G	K	S	T	V	V	Q	L	L	E	R	F	Y	D	P	M	A	G	S	V	F	L	D	G	K	E	I	K	Q	L	N	V	Q	W	L	R
Template Known Secondary structure																S		G	G	G			S			S							S	S	S							S	S	S	T	T									T	T	S	S			S						S	S	S	S		B	T	S	S						T
Template Predicted Secondary structure
Template SS confidence
		1027	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.												.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	D	V	N	T	V	F	Q	D	Y	A	L	F	P	H	M	S	I	L	D	N	V	A	Y	G	L	M	V	K	G	V	N	K	K	Q	R	H	A	M	A	Q	E	A	L	E	K	V	A	L	G	F	V	H	Q	R	K	P	S	.	.	.	.	.	.	.	.	.	.	.	Q	L	S	G	G	Q	R	Q	R	V	A
Query Conservation																																																												.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.																				.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.																				.	.	.	.
Template Sequence		A	Q	L	G	I	V	S	Q	E	P	I	L	F	D	C	.	S	I	A	E	N	I	A	Y	G	D	N	S	R	V	V	S	Y	E	E	.	.	.	.	I	V	R	A	A	K	E	A	N	I	H	Q	F	I	D	S	L	P	D	K	Y	N	T	R	V	G	D	K	G	T	Q	L	S	G	G	Q	K	Q	R	I	A
Template Known Secondary structure		T	S						S	S					S	S	.	B						T				S	S								.	.	.	.									T						S	S	T	T	T	G	G	G		B		S	T	T	S		S	S
Template Predicted Secondary structure																	.																				.	.	.	.
Template SS confidence
		1107	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.		.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140					.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	R	A	L	V	N	E	P	R	V	L	L	L	D	E	P	L	G	A	L	D	L	K	L	R	E	Q	M	Q	L	E	L	K	K	L	Q	Q	S	L	G	I	T	F	I	F	V	T	H	D	Q	G	E	A	L	S	M	S	D	R	V	A	V	F	N	N	G	R	I	E	Q	V	D	S	P	R	D	L	Y	M
Query Conservation
Alig confidence																																								.	.																.
Template Conservation																																								.	.																.
Template Sequence		I	A	R	A	L	V	R	Q	P	H	I	L	L	L	D	E	A	T	S	A	L	D	T	E	S	E	K	V	V	Q	E	A	L	D	K	A	R	E	.	.	G	R	T	C	I	V	I	A	H	R	L	S	T	I	Q	.	N	A	D	L	I	V	V	I	Q	N	G	K	V	K	E	H	G	T	H	Q	Q	L	L	A
Template Known Secondary structure											S	S					S		S	S	S																	S	S	.	.	S	S							S		T	T	G	G	G	.	S		S							T	B
Template Predicted Secondary structure																																								.	.																.
Template SS confidence
		1182	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.			1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.		.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.
		225	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	R	T	P	F	V	A
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		Q	.	K	G	I	Y	F	S
Template Known Secondary structure		S	.		S
Template Predicted Secondary structure			.
Template SS confidence
		1259		1260	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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