Job Description P77795 Confidence 94.91% Date Thu Jan 5 12:32:56 GMT 2012 Rank 493 Aligned Residues 132 % Identity 12% Template c3crqA_ PDB info PDB header:transferase Chain: A: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: structure of trna dimethylallyltransferase: rna2 modification through a channel Resolution 2.20 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.								.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.
Query Sequence		F	F	S	M	L	G	P	S	G	S	G	K	T	T	C	L	R	L	I	A	G	F	E	Q	L	S	G	G	A	I	.	.	.	.	.	.	.	S	I	F	G	K	P	A	S	N	L	P	P	W	E	R	D	V	N	T	V	F	Q	D	Y	A	L	F	P	H	M	S	I	L	D	N	V	A	Y	G	L	M	V	K
Query Conservation																																.	.	.	.	.	.	.
Alig confidence																										.	.	.				.	.	.	.	.	.	.
Template Conservation																										.	.	.
Template Sequence		A	I	F	L	M	G	P	T	A	A	G	K	T	D	L	A	M	A	L	A	D	A	L	P	.	.	.	C	E	L	I	S	V	D	S	A	L	I	Y	R	G	M	D	I	G	T	A	K	P	S	R	E	L	L	A	R	Y	P	H	R	L	I	D	I	R	D	P	A	E	S	Y	S	A	A	E	F	R	A	D	A
Template Known Secondary structure								S	T	T	S	S										T	T	S		.	.	.								T	T	T	T	B	T	T			T	T	T	T										S				S	S	S		B		T	T	S
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30				.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	N	K	K	Q	R	H	A	M	A	Q	E	A	L	E	K	V	A	L	G	F	V	H	Q	R	K	P	S	Q	L	S	G	G	Q	R	Q	R	V	A	I	A	R	A	L	V	N	E	P	R	V	L	L	L	D	E	P	L	G	A	L	D	L	K	L	R	E	Q	M	Q	L	E	L	K	K
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	A	M	A	K	A	T	A	R	G	R	I	P	L	L	V	G	G	T	M	L	Y	Y	K	A	L	L	E	G	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	T	V	A	Q	L	A	I	A	P	E	Q	R	Q	V	L	H	A	R	I	A	Q	R	F	R	Q	M	L	E	Q
Template Known Secondary structure											T	T								S														.	.	.	.	.	.	.	.	.	.	.	.	.	S										S	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.														.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions