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Job DescriptionP77795
Confidence100.00%DateThu Jan 5 12:32:56 GMT 2012
Rank59Aligned Residues217
% Identity28%Templatec2vf7B_
PDB info PDB header:dna-binding proteinChain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   10.........20.........30.........40.........50.
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Query Sequence  VSRLYGDVRAVDGVSIAIKDGEFFSMLGPSGSGKTTCLRLIA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LELNGVTRNNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQGSARLGGDLAQITRLVRVDQKPIGRTPR
Template Known Secondary structure  TTSSSTTSSTTS



SSGGG


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   503......510.........520.........530.........540.........550.........560.........570.........580..
 
   52.......60.........70.........80...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GFEQLSGGAISIFGKPASNLPPWERDVNTVFQ
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Template Sequence  SNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVPSVYAPCPVCHGTRYNAETLEVEYRGK
Template Known Secondary structure 

TTTTSSTS


TTSS
SSSSSSB
SSSTT






TTTSSS
B
TTGGG

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   600.........610.........620.........630.........640.........650.........660.........670.........
 
   84.....90.........100.........110.........120........ .130.........140.........150.... .....
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Query Sequence  DYALFPHMSILDNVAYGLMVKGVNKKQRHAMAQEALEKVALGFVH. QRKPSQLSGGQRQRVAIARALVNEPR. . . VLLLD
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Template Sequence  NIADVLALTVDEAHDFF. . . . . . ADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLD
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T
BT......TT
T
TTSBTT

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   685....690.........700. ........710.........720.........730.........740.........750........
 
   160.........170.........180.........190.........200........ .210.........220.........230...
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Query Sequence  EPLGALDLKLREQMQLELKKLQQSLGITFIFVTHDQGEALSMSDRVAVF. . . . . . NNGRIEQVDSPRDLYMRPRTPFVAG
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Template Sequence  EPTTGLHPADVERLQRQLVKLVDA. GNTVIAVEHKMQVV. AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGS. VTAP
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T.T



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   759760.........770.........780.. .......790...... ...800.........810.........820.........830. ....
 
   234.
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Query Sequence  FV
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Template Sequence  YL
Template Known Secondary structure 
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   836.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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